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Detailed information on CNT30247087


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ZRR5|TBA3_HORVU, E-value = 5e-91

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640127Avena sativaNymphaea colorata37.334.2187.91273forward
CNT30517711Avena sativaJuglans regia29.2340.3888.32214forward
CNT30702815Avena sativaQuercus lobata22.444.5786.59164forward
CNT30371538Avena sativaArabidopsis thaliana55.8786.1186.06409forward
CNT30727923Avena sativaCorchorus capsularis58.6136.2388.34429forward
CNT3071007Avena sativaQuercus suber34.4349.3286.51252forward
CNT30379228Avena sativaManihot esculenta55.8746.989.49409forward
CNT30709049Avena sativaGlycine max42.0844.4488.64308forward
CNT30177039Avena sativaSecale cereale87.0246.9191.52637forward
CNT30284381Avena sativaTriticum aestivum62.4359.8294.53457forward
CNT30391523Avena sativaTriticum turgidum62.1661.7494.29455forward
CNT3086234Avena sativaVigna radiata42.959.2586.31314forward
CNT30144939Avena sativaMedicago truncatula30.3345.5984.23222forward
CNT30655883Avena sativaTriticum dicoccoides62.4364.0194.31457forward
CNT3059767Avena sativaArabidopsis lyrata31.4232.4485.22230forward
CNT3075301Avena sativaBrassica juncea25.6835.487.77188forward
CNT30136973Avena sativaLolium perenne29.2350.9596.73214forward
CNT30219368Avena sativaKalanchoe fedtschenkoi31.4239.3887.39230forward
CNT30204030Avena sativaHelianthus annuus28.5550.3688.04209forward
CNT30624589Avena sativaDaucus carota13.6620.1689100forward
CNT30689745Avena sativaTriticum urartu80.677.4391.69590forward
CNT30720142Avena sativaTriticum spelta23.3647.7794.15171forward
CNT30430260Avena sativaPapaver somniferum34.9743.9985.94256forward
CNT30333509Avena sativaCynara cardunculus30.640.7382.59224forward
CNT30726291Avena sativaLupinus angustifolius56.1552.4286.86411forward

Expression of CNT30247087

Peptides detected in this lncRNA

>peptide 1 (55 aa)
PHNMHININQGKTQRPNITCILTKVRHKRPQHNMHINQGANQVQTYHRFLQRNRL*

>peptide 2 (32 aa)
MVATAAFTSLGTTSPRYIRQQAMYLPWRGSHLA

>peptide 3 (34 aa)
MREKTSTTLVELEIMHTALWTLARSPPGTTLGGW*

Sequence

>CNT30247087
GGCCACATAACATGCATATTAATATTAACCAAGGTAAGACACAAAGACCAAACATAACATGCATATTAACCAAGGTAAGACACAAAAGGCCACAACATAA
CATGCATATTAACCAAGGTGCGAACCAGGTTCAAACATACCACAGGTTCTTACAACGGAACAGGTTGTAAACCAAACATCACAAAGCAAACATGTTCAAA
CAGACAGATAACAGATAAAAGCCACTCTGGGCAGATCACAGGATATAGCAGTAGTCGGCCTTGGCACCAGGACAAAGGCTCTAGTACTCATCACCCTCAT
CGCCATCCTCACCCTCGTCGAACTCAGCACCAACTTCTTCATAGTCCTTCTCCAGGGCAGCAAGATCCTCACGGGCCTCAGAGAACTCTCCCTCCTCCAT
ACCCTCACCCACGTACCAGTGGACAAAGGCACGCTTGGCGTACATCAGGTCGAACTTGTGGTCGATGCGGGAGAAGACCTCAACAACACTGGTGGAGTTG
GAGATCATGCACACAGCCCTCTGGACCTTGGCAAGGTCACCACCTGGGACAACGCTGGGTGGCTGGTAGTTGATACCGCACTTGAAGCCAGTGGGGCACC
AGTCCACAAACTGGATAGTGCGCTTGGTCTTGATGGTGGCCACAGCAGCATTCACATCCTTGGGCACCACATCACCACGGTACATCAGACAGCAGGCCAT
GTACTTGCCATGGCGGGGGTCGCACTTGGCCA