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Detailed information on CNT3024728


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT000219, E-value = 3e-46

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677932Populus trichocarpaSetaria viridis33.6236.6984.62273forward
CNT30522101Populus trichocarpaSetaria italica33.6225.7584.62273forward
CNT30532757Populus trichocarpaEucalyptus grandis24.2644.7785.79197forward
CNT30547493Populus trichocarpaIpomoea triloba33.1324.0688.85269forward
CNT30517711Populus trichocarpaJuglans regia29.4345.0988.7239forward
CNT30702815Populus trichocarpaQuercus lobata20.244.5787.8164forward
CNT30371538Populus trichocarpaArabidopsis thaliana33.2556.8486.3270forward
CNT30618214Populus trichocarpaSesamum indicum11.3327.9691.392forward
CNT30379228Populus trichocarpaManihot esculenta35.5933.1492.04289forward
CNT30709049Populus trichocarpaGlycine max33.2538.9689.26270forward
CNT30177039Populus trichocarpaSecale cereale33.6220.187.18273forward
CNT30284381Populus trichocarpaTriticum aestivum33.6235.7388.28273forward
CNT30224654Populus trichocarpaHordeum vulgare32.5117.2984.47264forward
CNT30391523Populus trichocarpaTriticum turgidum33.6237.0484.98273forward
CNT3086234Populus trichocarpaVigna radiata29.1944.7287.76237forward
CNT30555352Populus trichocarpaOryza glaberrima32.5129.282.2264forward
CNT30144939Populus trichocarpaMedicago truncatula30.4250.7286.64247forward
CNT30439881Populus trichocarpaAegilops tauschii24.5125.9585.93199forward
CNT30249355Populus trichocarpaAvena sativa33.6236.388.28273forward
CNT30655883Populus trichocarpaTriticum dicoccoides33.6238.2487.91273forward
CNT30265526Populus trichocarpaBrassica rapa33.2527.1988.15270forward
CNT30445643Populus trichocarpaSaccharum spontaneum33.1330.3385.87269forward
CNT30953Populus trichocarpaZea mays27.5923.6885.71224forward
CNT30229012Populus trichocarpaAnanas comosus56.7755.6184.6461forward
CNT30217674Populus trichocarpaKalanchoe fedtschenkoi24.2655.1885.28197forward
CNT30204030Populus trichocarpaHelianthus annuus27.4653.7386.55223forward
CNT30624589Populus trichocarpaDaucus carota16.0126.2190130forward
CNT30689745Populus trichocarpaTriticum urartu33.6235.8387.91273forward
CNT30720142Populus trichocarpaTriticum spelta22.7851.6886.49185forward
CNT30340361Populus trichocarpaEragrostis tef20.8132.3183.43169forward
CNT30361562Populus trichocarpaSorghum bicolor33.1327.286.25269forward
CNT30597037Populus trichocarpaOryza meridionalis22.0434.1683.24179forward
CNT30369826Populus trichocarpaOryza glumipatula20.8133.0186.98169forward
CNT30571197Populus trichocarpaVitis vinifera35.5973.3588.58289forward
CNT3052700Populus trichocarpaAmborella trichopoda18.3547.1587.25149forward
CNT30106557Populus trichocarpaOryza longistaminata23.5289.2581.68191forward
CNT30100634Populus trichocarpaOryza rufipogon24.1456.3286.73196forward
CNT30578254Populus trichocarpaOryza barthii20.8160.5782.84169forward
CNT30582828Populus trichocarpaEchinochloa crusgalli33.1331.3586.99269forward
CNT30117950Populus trichocarpaOryza nivara26.1125.5782.55212forward
CNT30558847Populus trichocarpaPanicum hallii25.2527.7884.88205forward
CNT30724701Populus trichocarpaLupinus angustifolius35.3425.4288.5287forward

Expression of CNT3024728

Peptides detected in this lncRNA

>peptide 1 (72 aa)
MVGFLSRDDWCIGGKHEVDSWVRDQVSLEFSNIHIQSTIKPQRGGQGGNDLELQYKKSCQICTIFKFEKATEE

>peptide 2 (56 aa)
MPSPTYQCTKARLAYMRSNLESMRENTSATLVELEIMQTALCTLARSPPGTTVGGW*

Sequence

>CNT3024728
AAAAAAACTTTCAATAACAGTCGTCCATCACATTCCATGTAGAGTAGACATGGCTTTAGCATACGCAGGTAGATTTTAAACACCTTTGAAACAATAAAAG
CTTCAAATGGTGCAATTACATGTAGATATTCATTAAAAATAAAAATACAACATATGGCAATGCCATACAGAAACACATCATATTAGGCTACACCCACTAC
GAAGCATTTCACATGTACTCGTCACCATCATCATCATCACCCTCAGCTGATTCAGCACCAACCTCCTCATAATCCTTCTCAAGGGCGGCAAGATCCTCAC
GAGCCTCAGAGAACTCGCCTTCCTCCATGCCCTCACCAACATACCAGTGCACGAAGGCACGCTTGGCATACATGAGGTCAAATTTGGAGTCAATGCGAGA
GAACACCTCAGCAACACTGGTAGAATTGGAGATCATGCAAACAGCCCTCTGCACCTTGGCAAGATCACCACCAGGAACAACAGTGGGTGGCTGGTAATTG
ATACCACACTTGAATCCAGTGGGGATCACATTTAGCCATCATTGATGAAGGCTCAAAAGCACTGTTAGTGATCTCAGCAACAGAGAGTTGTTCATGGTAG
GCTTTCTCAGCAGAGATGACTGGTGCATAGGAGGAAAGCATGAAGTGGATTCTTGGGTAAGGGACCAAGTTAGTCTGGAATTCAGTAACATCCACATTCA
AAGCACCATCAAACCTCAGAGAGGCGGTCAAGGAGGAAATGACCTGGAATTACAATACAAAAAGTCATGTCAGATCTGTACTATCTTTAAATTTGAGAAA
GCTACAGAAGAA