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Detailed information on CNT30542059


BLAST search results

BLAST vs Swiss-Prot:
sp|Q41963|TIP12_ARATH, E-value = 2e-122

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30549654Brassica napusIpomoea triloba20.5545.5681.1164forward
CNT30514098Brassica napusJuglans regia21.6843.6979.19173forward
CNT30698180Brassica napusQuercus lobata14.1632.9484.96113forward
CNT30375776Brassica napusArabidopsis thaliana34.9646.7392.11279forward
CNT30618329Brassica napusSesamum indicum20.813.4683.13166forward
CNT30727224Brassica napusCorchorus capsularis28.0736.5481.7224forward
CNT30382128Brassica napusManihot esculenta13.0326.6787.5104forward
CNT30524746Brassica napusPhaseolus vulgaris30.4526.8881.48243forward
CNT30628402Brassica napusVigna unguiculata30.8329.1579.27246forward
CNT30708652Brassica napusGlycine max24.6963.5581.22197forward
CNT30223457Brassica napusHordeum vulgare13.7836.9184.55110forward
CNT30393023Brassica napusTriticum turgidum14.1625.8684.07113forward
CNT3084637Brassica napusVigna radiata33.0822.9479.92264forward
CNT30239005Brassica napusBrassica oleracea65.2952.15100521forward
CNT30552975Brassica napusOryza glaberrima19.1726.3883.01153forward
CNT30146554Brassica napusMedicago truncatula14.6631.5485.47117forward
CNT30443527Brassica napusAegilops tauschii13.7820.0784.55110forward
CNT30310654Brassica napusCamelina sativa26.3253.4485.71210forward
CNT3075983Brassica napusBrassica juncea38.8544.2294.19310forward
CNT30135940Brassica napusLolium perenne18.6728.0183.22149forward
CNT30229501Brassica napusAnanas comosus15.2920.5485.25122forward
CNT3066802Brassica napusLeersia perrieri20.5569.284.76164forward
CNT30623609Brassica napusDaucus carota21.6830.7880.92173forward
CNT30365926Brassica napusSorghum bicolor19.823.6281.65158forward
CNT30620034Brassica napusCajanus cajan28.0721.3179.46224forward
CNT30369235Brassica napusOryza glumipatula23.5616.6780.85188forward
CNT30420453Brassica napusPapaver somniferum24.6922.0685.28197forward
CNT30706772Brassica napusPrunus avium16.7938.1882.84134forward
CNT3057351Brassica napusAmborella trichopoda24.8123.2784.34198forward
CNT30579360Brassica napusEchinochloa crusgalli17.5423.0682.14140forward
CNT30176366Brassica napusVigna angularis25.4442.3879.31203forward
CNT30113801Brassica napusFicus carica14.1627.3684.07113forward
CNT3050798Brassica napusCucumis sativus12.2829.6185.7198forward
CNT30114821Brassica napusEutrema salsugineum25.6919.6289.27205forward

Expression of CNT30542059

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MFPPRKAPKVTAGLTCPPEMLAPTETATKRPKA*

>peptide 2 (38 aa)
MEAPLKAPPARMLAPTMKPMAMGAIVPRLPFLGSMAVA*

>peptide 3 (31 aa)
AVFDDVNKVVDDSGESTTDKRTNPINPVVTP*

Sequence

>CNT30542059
GGCCGTTTTCGATGATGTAAACAAAGTCGTAGATGATTCCGGCGAGTCCACCACCGACAAGAGGACCAACCCAATAAATCCAGTGGTTACTCCATGACCA
GCTCACGACGGCTGGTCCGAAAGCGACGGCTGGGTTCATGGAGGCTCCGCTGAAAGCTCCACCAGCAAGGATGTTAGCTCCGACGATGAAACCAATGGCG
ATGGGTGCGATTGTTCCTAGGCTACCGTTTTTGGGGTCGATGGCTGTGGCGTAGACGGTGTAGACGAGCCCGAAGGTCATCACGATCTCGAAGACGAGAC
CATTCAAGGTTCCAACTCCTGCGGAGAGACCGAACGCTGGAACTGCCTAAAAATTTAATGTTTTCAAAAGCCACCGGTGGCGAACTGAAGGAGGAAGCAA
GCGACGACTGAGCCAAGAAGCTGAGCAATCCAGTAGAGGAGACCACGGAGGAGAGTGATGTTTCCACCCAGGAAGGCACCGAAGGTAACGGCAGGGTTAA
CGTGTCCACCGGAGATGTTGGCACCGACAGAAACAGCGACGAAGAGACCGAAAGCATGAGCTAAGGCAGCGGCGACAAGGCCTGAAGGAGTGGTGGCTCC
ATTGTCAGTGAGCTTGTTGAAAGCAATTCCTGAGCCTGAGCCGGCGAAGACAAAGATCAAAGTCGAGATAAACTCAGCGAGGGCCGCCCTAAGTGCGCTG
GGGTGAGTCACTTCTTCTTGGACTCCGCCGATGGCGATGTTTCTGGTCGGCATGATGGGAGAGAATAAATTGATTCGAGGTTAATTAAAACGTTTTGA