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Detailed information on CNT30549654

BLAST search results

BLAST vs Swiss-Prot:
sp|P50156|TIP11_ORYSJ, E-value = 2e-47

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30678075	Ipomoea triloba	Setaria viridis	26.67	18.71	83.33	96	forward
CNT30519799	Ipomoea triloba	Setaria italica	23.33	13.98	89.29	84	forward
CNT30374650	Ipomoea triloba	Arabidopsis thaliana	21.39	17.62	85.71	77	forward
CNT30618415	Ipomoea triloba	Sesamum indicum	49.72	28.69	81.01	179	forward
CNT30727224	Ipomoea triloba	Corchorus capsularis	36.94	21.7	84.21	133	forward
CNT30382128	Ipomoea triloba	Manihot esculenta	22.22	20.51	86.25	80	forward
CNT30524797	Ipomoea triloba	Phaseolus vulgaris	47.22	24.39	86.47	170	forward
CNT30628402	Ipomoea triloba	Vigna unguiculata	38.33	16.35	89.86	138	forward
CNT30503973	Ipomoea triloba	Nicotiana attenuata	32.78	17.28	82.2	118	forward
CNT30712600	Ipomoea triloba	Glycine max	47.22	22.79	90.59	170	forward
CNT3042438	Ipomoea triloba	Prunus dulcis	33.33	14.58	89.17	120	forward
CNT30293493	Ipomoea triloba	Triticum aestivum	25.28	14.2	89.01	91	forward
CNT30223457	Ipomoea triloba	Hordeum vulgare	20	24.16	87.5	72	forward
CNT30393023	Ipomoea triloba	Triticum turgidum	27.5	22.65	89.9	99	forward
CNT30568703	Ipomoea triloba	Actinidia chinensis	23.06	5.01	90.36	83	forward
CNT3084637	Ipomoea triloba	Vigna radiata	34.17	10.69	91.06	123	forward
CNT30542059	Ipomoea triloba	Brassica napus	45.56	20.55	81.1	164	forward
CNT30239005	Ipomoea triloba	Brassica oleracea	36.94	13.31	80.45	133	forward
CNT30552975	Ipomoea triloba	Oryza glaberrima	40	24.83	86.11	144	forward
CNT30146554	Ipomoea triloba	Medicago truncatula	35	33.96	82.54	126	forward
CNT30247019	Ipomoea triloba	Avena sativa	35	10.25	87.3	126	forward
CNT30660459	Ipomoea triloba	Triticum dicoccoides	25.28	14.06	91.21	91	forward
CNT30135940	Ipomoea triloba	Lolium perenne	35	23.68	86.51	126	forward
CNT30721484	Ipomoea triloba	Triticum spelta	32.22	15.87	87.93	116	forward
CNT30361046	Ipomoea triloba	Sorghum bicolor	32.78	18.94	85.59	118	forward
CNT30619906	Ipomoea triloba	Cajanus cajan	36.67	60	88.64	132	forward
CNT30154895	Ipomoea triloba	Prunus persica	33.33	15.89	89.17	120	forward
CNT30706772	Ipomoea triloba	Prunus avium	35.83	36.75	88.37	129	forward
CNT30331344	Ipomoea triloba	Dioscorea rotundata	28.06	14.87	91.09	101	forward
CNT30579360	Ipomoea triloba	Echinochloa crusgalli	47.5	28.17	85.96	171	forward
CNT30176366	Ipomoea triloba	Vigna angularis	35.56	26.72	89.84	128	forward
CNT30113801	Ipomoea triloba	Ficus carica	40.83	35.59	89.12	147	forward
CNT3050751	Ipomoea triloba	Cucumis sativus	35	12.8	84.13	126	forward

Expression of CNT30549654

Peptides detected in this lncRNA

>peptide 1 (89 aa)
MLPPTKAPKVTAGLTWPPEMLAPTETATKRPKAWAMEAEMSVQMNSARAALRLPGCRSSSWLPSATWRIGIAGKSRKKWVELRKLNYVRE

Sequence

>CNT30549654
CAAGCCGGTTGAAAGCTCGAGGAGGAAGCAAGCAACAGTTGAGCCAAGCAGCTGAGCAATGACGTAGAGAAGGCCGCGGAAGAAGGTGATGTTGCCGCCA
ACAAAGGCGCCGAAAGTGACGGCGGGGTTGACGTGGCCGCCGGAGATGTTGGCGCCGACGGAGACGGCGACGAAGAGGCCGAAGGCGTGGGCAATGGAGG
CGGAAATGAGTGTACAGATGAACTCTGCCAGGGCGGCCTTGAGGTTGCCCGGGTGCCGCAGCTCCTCATGGCTGCCCAGCGCTACTTGGCGGATCGGCAT
CGCCGGAAAATCAAGAAAAAAGTGGGTGGAGCTGAGAAAATTGAATTATGTTAGAGAGTG