Detailed information on CNT30365926


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ATL2|TIP51_MAIZE, E-value = 2e-27

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691498Sorghum bicolorOryza sativa14.849.586.8799forward
CNT30376051Sorghum bicolorArabidopsis thaliana25.1120.6480.36168forward
CNT30542059Sorghum bicolorBrassica napus23.6219.881.65158forward
CNT30239005Sorghum bicolorBrassica oleracea23.6215.8281.65158forward
CNT301194Sorghum bicolorZea mays15.9921.4485.05107forward
CNT30680513Sorghum bicolorTriticum urartu15.5540.3187.5104forward
CNT30117062Sorghum bicolorOryza nivara8.3724.3592.8656forward
CNT3063260Sorghum bicolorSelaginella moellendorffii1323.286.2187forward

Expression of CNT30365926

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MTRRRIDEDGEINTTGCIAFGSGSTFFMGTDPAGRRAGRRR*

>peptide 2 (91 aa)
MEPPLKGPAARMLAPTMKPMAMGAMVPRDPFLGSAAVAYTVYTSAKVITISITTPSISLIPDTPCVGIACPWVTYFRRRHATDAPSTWATQ*

>peptide 3 (49 aa)
YLEILNRTLHLYRYRSNGSLAYSMLTPLVKIKPEGVMQTRPNIITSAKR*

Sequence

>CNT30365926
TGTACTTGGAAATACTGAACCGTACATTACATTTATACAGGTATAGATCGAACGGTTCTCTCGCTTACAGCATGTTGACACCGTTGGTGAAAATTAAACC
AGAAGGGGTAATGCAAACAAGACCAAACATAATCACAAGCGCGAAGCGATGACACGACGGCGAATCGACGAGGACGGTGAAATCAACACGACGGGTTGCA
TTGCATTTGGGTCCGGATCGACTTTCTTCATGGGTACTGATCCTGCTGGCCGACGGGCTGGTAGGAGGCGATGAACACGTCGCCGTAGACGAGCCCGGCC
AGGAGCGGGCCGGGTTCATGGAGCCGCCGCTGAAGGGTCCGGCCGCCAGGATGTTGGCGCCGACGATGAAGCCGATGGCGATGGGCGCGATGGTGCCCAG
GGACCCCTTCTTGGGGTCGGCCGCGGTGGCGTACACGGTGTACACGAGCGCGAAGGTGATCACGATCTCCATCACCACGCCCTCGATCTCGCTGATCCCG
GACACGCCGTGTGTCGGGATAGCCTGTCCGTGGGTGACGTACTTCAGGAGAAGGCACGCCACGGACGCGCCGAGCACCTGGGCGACCCAGTAGAAGATGC
CGGTGAGGATGGTGATGTGGCCGCCGACGGCGAGGCCGAAGGTGACGGCGGGGTTCAGGTGGCCGCCGG