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Detailed information on CNT30223457


BLAST search results

BLAST vs Swiss-Prot:
sp|P50156|TIP11_ORYSJ, E-value = 2e-59

BLAST vs NONCODE:
NONGMAT001209, E-value = 9e-10

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673906Hordeum vulgareSetaria viridis48.6622.9891.72145forward
CNT30521445Hordeum vulgareSetaria italica52.3517.1291.03156forward
CNT30549654Hordeum vulgareIpomoea triloba24.162087.572forward
CNT30618329Hordeum vulgareSesamum indicum43.9610.6286.26131forward
CNT30727223Hordeum vulgareCorchorus capsularis32.556.9185.5797forward
CNT30524746Hordeum vulgarePhaseolus vulgaris35.9111.8482.24107forward
CNT30628402Hordeum vulgareVigna unguiculata20.817.3587.162forward
CNT30712600Hordeum vulgareGlycine max21.148.4588.8963forward
CNT3042438Hordeum vulgarePrunus dulcis36.2413.1282.41108forward
CNT30392788Hordeum vulgareTriticum turgidum49.6611.3796.62148forward
CNT30592382Hordeum vulgareMusa acuminata53.3626.7288.68159forward
CNT3084637Hordeum vulgareVigna radiata32.558.4384.5497forward
CNT30542059Hordeum vulgareBrassica napus36.9113.7884.55110forward
CNT30239005Hordeum vulgareBrassica oleracea36.9111.0184.55110forward
CNT30552975Hordeum vulgareOryza glaberrima10051.3891.61298forward
CNT30443527Hordeum vulgareAegilops tauschii49.3326.8291.16147forward
CNT30247019Hordeum vulgareAvena sativa47.9911.6493.71143forward
CNT30660459Hordeum vulgareTriticum dicoccoides32.2114.8485.4296forward
CNT30135940Hordeum vulgareLolium perenne49.3327.6394.56147forward
CNT301194Hordeum vulgareZea mays37.5822.4491.96112forward
CNT30229576Hordeum vulgareAnanas comosus50.6721.2187.42151forward
CNT3066802Hordeum vulgareLeersia perrieri48.3260.7690.28144forward
CNT30623609Hordeum vulgareDaucus carota49.6626.3381.76148forward
CNT30349655Hordeum vulgareEragrostis tef21.147.9987.363forward
CNT30364799Hordeum vulgareSorghum bicolor50.3419.7189.33150forward
CNT30619906Hordeum vulgareCajanus cajan17.1123.1896.0851forward
CNT30596416Hordeum vulgareOryza meridionalis39.625.9991.53118forward
CNT30369235Hordeum vulgareOryza glumipatula50.6713.3988.08151forward
CNT30154895Hordeum vulgarePrunus persica21.148.3487.363forward
CNT30706772Hordeum vulgarePrunus avium36.2430.7782.41108forward
CNT3057351Hordeum vulgareAmborella trichopoda5017.5183.22149forward
CNT30331222Hordeum vulgareDioscorea rotundata34.913.2585.58104forward
CNT30101968Hordeum vulgareOryza rufipogon49.3319.3492.52147forward
CNT30576681Hordeum vulgareOryza barthii39.620.3193.22118forward
CNT30579360Hordeum vulgareEchinochloa crusgalli50.3424.7193.33150forward
CNT30113801Hordeum vulgareFicus carica44.9732.4584.33134forward
CNT3050792Hordeum vulgareCucumis sativus47.3214.1383.69141forward
CNT30114821Hordeum vulgareEutrema salsugineum37.5810.7283.04112forward

Expression of CNT30223457

Peptides detected in this lncRNA

>peptide 1 (98 aa)
GGVHGRAGEGAADEDVGADDEADGDGRDGAQAALLGVDGGGVHRVHQPEGAGGEPAGGEAEEEAGGGGAQQLRHPVEQAAEEGDVAAHEGAEGHRRVHV

>peptide 2 (75 aa)
AGFMDAPEKAPPTRMLAPTMKPMAMGAMVPRLPFLGSTAVAYTVYTSPKVPVGSPPVEKRRRKQAAVEPSSCATQ*

Sequence

>CNT30223457
CGGCGGGGTTCATGGACGCGCCGGAGAAGGCGCCGCCGACGAGGATGTTGGCGCCGACGATGAAGCCGATGGCGATGGGCGCGATGGTGCCCAGGCTGCC
CTTCTTGGGGTCGACGGCGGTGGCGTACACCGTGTACACCAGCCCGAAGGTGCCGGTGGGGAGCCCGCCGGTGGAGAAGCGGAGGAGGAAGCAGGCGGCG
GTGGAGCCCAGCAGCTGCGCCACCCAGTAGAGCAGGCCGCGGAAGAGGGTGATGTTGCCGCCCACGAAGGCGCCGAAGGTCACCGCCGGGTTCACGTG