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Detailed information on CNT30369235


BLAST search results

BLAST vs Swiss-Prot:
sp|Q94CS9|TIP12_ORYSJ, E-value = 3e-106

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673906Oryza glumipatulaSetaria viridis14.9826.7888.76169forward
CNT30518137Oryza glumipatulaJuglans regia16.1328.8979.12182forward
CNT30628407Oryza glumipatulaVigna unguiculata13.4820.2980.26152forward
CNT30223457Oryza glumipatulaHordeum vulgare13.3950.6788.08151forward
CNT30397893Oryza glumipatulaTriticum turgidum15.0726.6985.88170forward
CNT30586176Oryza glumipatulaMusa acuminata21.3739.5182.57241forward
CNT30542059Oryza glumipatulaBrassica napus16.6723.5680.85188forward
CNT30443527Oryza glumipatulaAegilops tauschii15.0731.0286.47170forward
CNT30254829Oryza glumipatulaAvena sativa15.0723.9887.06170forward
CNT30136463Oryza glumipatulaLolium perenne15.0723.1990170forward
CNT301194Oryza glumipatulaZea mays16.4937.2785.48186forward
CNT30229576Oryza glumipatulaAnanas comosus18.7129.6384.36211forward
CNT3066802Oryza glumipatulaLeersia perrieri15.9675.9593.89180forward
CNT30623609Oryza glumipatulaDaucus carota15.3430.7883.24173forward
CNT30364799Oryza glumipatulaSorghum bicolor15.0722.3487.06170forward
CNT30619906Oryza glumipatulaCajanus cajan7.0936.3687.580forward
CNT3057351Oryza glumipatulaAmborella trichopoda16.9322.4485.86191forward

Expression of CNT30369235

Peptides detected in this lncRNA

>peptide 1 (79 aa)
MTISNTTAFQAPTPADSEKAPTAAPPVAILSSRLMFPPTNAPNVTAGFTCPPEMLAPTATATNRASACAREAAISPDGVV

>peptide 2 (41 aa)
MEAPSKAPPARMLAPTMKPMAMGAMTPRSPFLGSTAVAYTV*

>peptide 3 (67 aa)
MVQTQHVCIYLSTNSNKDVKNDSEESFGLGCMGCVDIILQMRQPMDGRRYSCNAWLAWLTAQHRFWN*

>peptide 4 (36 aa)
MSPPGSRARRRCWLPPPPPRTGPARAPGRRRSAPTAS

Sequence

>CNT30369235
GCAGAACTAGTGATTTTTAGATAATTGAATTCATTTCGGCCTTTGCTTCAAATAAGTTACAACCATTATTGAGAACATGATGGTTCGTTTTCTACGTACA
TCCCTTAATAATATATAAATAATAGATAGATGGGATTTATTTAGGTCCTCATTTGGAGGAAGCAAATGGATCGGAGCGCATAAACTCGTTTCAATCATGA
AGTGATGGTGCAAACGCAGCATGTATGTATATATCTTTCCACCAACTCAAACAAGGACGTGAAGAACGACAGTGAAGAGAGCTTTGGATTAGGATGCATG
GGATGTGTTGACATTATATTGCAGATGAGACAACCGATGGATGGACGACGTTACAGCTGCAATGCATGGTTGGCTTGGTTGACAGCACAGCACAGATTTT
GGAATTAAAGGAGATTTACGTAATTTGTTTGTACAGAAGAAGAGAGTAGTAATTGATTGGGGGTGGAAGACGACACAGGTAGCAGCTGCATGGAGTAATT
AATATTCTAGCTATATATGGATCGAGACGGGGGACGAATTCGATTATTGAGACTGGGGGCAGACGATATGATATGATATGATCAGTAGTCGGCGGTGGGC
AGCTGGTCGTGCGGGCGCTGGCCGATGAAGATGATGTCGTAGATGAGCGCGGCGATGGCGGCGCCGACGAAGGGGCCGAGCCAGTAGACCCAGTGGTTGT
CCCAGACTCCGGTGACGACGGCGGGGCCGAAGGAGACGGCGGGGTTCATGGAGGCGCCGTCGAAGGCGCCGCCGGCGAGGATGTTGGCGCCGACGATGAA
GCCGATGGCGATGGGGGCGATGACACCGAGGTCGCCCTTCTTGGGATCCACCGCGGTGGCGTACACGGTGTAGACGAGGCCGAAGGTCATGACGATCTCG
AACACCACCGCGTTCCAGGCGCCCACGCCCGCCGACAGCGAGAAGGCACCCACGGCGGCGCCGCCCGTCGCGATCTTGAGCAGCAGGCTGATGTTCCCCC
CCACGAACGCGCCGAATGTCACCGCCGGGTTCACGTGCCCGCCGGAGATGTTGGCTCCCACCGCCACCGCCACGAACAGGGCCAGCGCGTGCGCCAGGGA
GGCGGCGATCAGCCCCGACGGCGTCGTG