Detailed information on CNT3075983


BLAST search results

BLAST vs Swiss-Prot:
sp|Q41963|TIP12_ARATH, E-value = 3e-59

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30514098Brassica junceaJuglans regia15.2627.0282.24107forward
CNT30375776Brassica junceaArabidopsis thaliana39.2346.0690.55275forward
CNT30727224Brassica junceaCorchorus capsularis29.3933.6180.58206forward
CNT30382149Brassica junceaManihot esculenta10.2725.2687.572forward
CNT30628528Brassica junceaVigna unguiculata31.9525.2581.25224forward
CNT30708652Brassica junceaGlycine max28.163.5581.73197forward
CNT30586176Brassica junceaMusa acuminata18.8321.6480.3132forward
CNT3084637Brassica junceaVigna radiata31.5319.281221forward
CNT30542059Brassica junceaBrassica napus44.2238.8594.19310forward
CNT30239005Brassica junceaBrassica oleracea24.2517.0296.47170forward
CNT30146554Brassica junceaMedicago truncatula15.9830.1984.82112forward
CNT30260230Brassica junceaBrassica rapa16.264085.09114forward
CNT30612709Brassica junceaArabis alpina27.6718.2385.57194forward
CNT30620034Brassica junceaCajanus cajan33.3822.2679.06234forward
CNT30706772Brassica junceaPrunus avium16.8333.6283.05118forward
CNT30176366Brassica junceaVigna angularis28.9642.3882.27203forward
CNT3050798Brassica junceaCucumis sativus9.720.5486.7668forward

Expression of CNT3075983

Peptides detected in this lncRNA

>peptide 1 (74 aa)
MRNKNKSNNIEFWQSSVISCGQLLVAVLVDEDKLVDESGESTTDKRTSPVDPVVGPRPAHDGWSKSHGWVHGGE*

>peptide 2 (33 aa)
MEESDVPTDESTEGNGGVNVTTRDVSTDGNSDE*

Sequence

>CNT3075983
CAGGGAACTAAAACTCCAACGACAAACCCAAATACACAATAAAATCAACATACAACGATTCATCTAAAAAAGATTCAACGACCACAAAGAAACCCCATTA
CGATGCGAAATAAAAACAAATCAAATAACATTGAGTTTTGGCAGTCTTCAGTAATCAGTTGTGGGCAATTGCTCGTGGCCGTTTTGGTTGATGAAGACAA
ACTCGTAGATGAGTCCGGCGAGTCCACCACCGACAAGAGGACCAGCCCAGTAGATCCAGTGGTTGGTCCACGTCCAGCTCACGACGGCTGGTCCAAAAGC
CACGGCTGGGTTCATGGAGGAGAGTGATGTTCCCACCGACGAAAGCACCGAAGGTAACGGCGGGGTTAACGTGACCACCAGAGATGTTAGCACCGACGGA
AACAGCGACGAATAGACCGAAAGCATGAGCTAAAGCAGCGGCGACGAGGCCTGAAGGAGTGGTGGCACCATTGTCAGTGAGCTTGTTGAAAGCGATTCCG
GAGCCTGAGCCGGCGAAGACAAAGATCAAAGTCGAGATAAACTCAGCGAGCGCCGCCCTAAGTGCGCTGGGGTGAGTCACTTCTTCTTGGACTCCGCCGA
TGGCAATGTTTCTGATCGGCATGATCGATGGGAGTTAATTGGTTTGAAGTTAAAATGTTTTGAGAGAGAGAGAGAGAGAGTTATGGGTTTATTTGTGTAG
T