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Detailed information on CNT30114821


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30375250Eutrema salsugineumArabidopsis thaliana12.2530.9987.5128forward
CNT30712559Eutrema salsugineumGlycine max11.3920.883.19119forward
CNT30223457Eutrema salsugineumHordeum vulgare10.7237.5883.04112forward
CNT30542059Eutrema salsugineumBrassica napus19.6225.6989.27205forward
CNT30239005Eutrema salsugineumBrassica oleracea19.6220.5289.27205forward
CNT30443527Eutrema salsugineumAegilops tauschii10.7220.4483.93112forward
CNT30256642Eutrema salsugineumAvena sativa10.7221.7581.25112forward
CNT30310654Eutrema salsugineumCamelina sativa15.2240.4686.79159forward
CNT30260230Eutrema salsugineumBrassica rapa7.1826.3293.3375forward
CNT30612709Eutrema salsugineumArabis alpina32.7332.1484.21342forward
CNT30229501Eutrema salsugineumAnanas comosus11.7720.7183.74123forward
CNT3066802Eutrema salsugineumLeersia perrieri13.0157.3886.03136forward
CNT30623609Eutrema salsugineumDaucus carota13.1124.3881.75137forward
CNT30596416Eutrema salsugineumOryza meridionalis11.125.5581.9116forward
CNT3057357Eutrema salsugineumAmborella trichopoda13.9723.1483.56146forward
CNT30101982Eutrema salsugineumOryza rufipogon10.7220.5581.25112forward
CNT30334322Eutrema salsugineumCynara cardunculus10.5323.7182.73110forward

Expression of CNT30114821

Peptides detected in this lncRNA

>peptide 1 (66 aa)
MVVSADENKLVDESGESTTDKRTSPVNPVVAPLKAPPARMFAPTMKPMAIGAIVPRLPFLGSMAVA*

>peptide 2 (35 aa)
MRLMIQLRQRDRTPEPPAKNNILKGKKGLVTCCKS*

Sequence

>CNT30114821
GCATAATTCACATCCCCTGGTTTTATCATATATATAGTCATTAATACCGTACAATACAATTGCACAAAGACAAAAGCCTTCCAGGGAAATAAAAACTCCA
ACAACAAACCCAAATACAACATTAATCAACATACAAAGATTCATCTAAAAAAAGATCCAACGGTCACAAAGAAACCCAATCACGATGCGAAACAGAAACA
AATCAAATCACAACATCGAATTTTTTTTTTTTTTTTTTTTTTTGGGTCTTCAATAATCAGTGGTGGGCAATTGCTCATGGTCGTTTCCGCCGATGAAAAC
AAACTCGTAGATGAGTCCGGCGAGTCCACCACCGACAAGAGGACCAGCCCAGTAAACCCAGTGGTTGCTCCACTGAAAGCTCCACCGGCGAGGATGTTTG
CTCCGACGATGAAACCAATGGCGATTGGTGCGATTGTTCCGAGACTTCCGTTTTTGGGGTCGATGGCGGTTGCGTAGACTGTGTAGACGAGCCCGAAGGT
CATCACGATCTCGAAGACGAATGCGTTTAATGATCCAACTCCGGCAGAGAGACCGAACGCCGGAACCGCCTGCAAAAAATAACATTTTGAAAGGAAAAAA
AGGTTTAGTTACTTGCTGTAAAAGTTAGGTCAAAGGGTTGTTTAAGTGAAAATACTCATTATGTAATGGATATAAACCGAACCCAAAACTTGGTTCAATT
AAGTTTTAAACAGCATCAAATCCACGAAATCTAATTTTATTAGTTGAAATAAACACCTTTTATCAAAAACTAAACAAGAACAATTCAAAGTTCAAACCAA
GACCAAAACCCTACCTTACCAAATCGATTCGTACTAGAATACAATTAGGATCACACCCAAAAATTTGATTCAGAAACTGAATTAATTTAAATACGATTAC
GATATTTATACTTTCAAAGTTCAAAACTAACCATACAAAACATTAAAAAAACTAACTTTAGTTTCTTTACATTTTTAGGCCAAAAAAGAACCAGAACCAA
ACCTATTAGCTAGTTTAGTGACTAATTAATTTTCTGAAACCAAAA