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Detailed information on CNT30146554


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FY14|TIP1_MEDTR, E-value = 5e-59

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30549654Medicago truncatulaIpomoea triloba33.963582.54126forward
CNT30698180Medicago truncatulaQuercus lobata21.8323.6286.4281forward
CNT30618415Medicago truncatulaSesamum indicum46.0927.480.7171forward
CNT30727222Medicago truncatulaCorchorus capsularis26.9518.988100forward
CNT30382128Medicago truncatulaManihot esculenta48.2545.984.36179forward
CNT30628402Medicago truncatulaVigna unguiculata48.2521.2185.47179forward
CNT30712600Medicago truncatulaGlycine max81.9440.7582.89304forward
CNT3042438Medicago truncatulaPrunus dulcis21.299.686.0879forward
CNT30562195Medicago truncatulaActinidia chinensis29.6513.5384.55110forward
CNT30542059Medicago truncatulaBrassica napus31.5414.6685.47117forward
CNT30239005Medicago truncatulaBrassica oleracea21.027.8188.4678forward
CNT3075983Medicago truncatulaBrassica juncea30.1915.9884.82112forward
CNT30619906Medicago truncatulaCajanus cajan48.2581.3682.12179forward
CNT30154895Medicago truncatulaPrunus persica23.9911.7985.3989forward
CNT30706772Medicago truncatulaPrunus avium31.2733.0584.48116forward
CNT30579749Medicago truncatulaEchinochloa crusgalli21.5613.058580forward
CNT30113856Medicago truncatulaFicus carica39.8914.7482.43148forward
CNT3050751Medicago truncatulaCucumis sativus44.4716.7789.09165forward

Expression of CNT30146554

Peptides detected in this lncRNA

>peptide 1 (68 aa)
MLPPTKAPKVTAGLTCPPEMLAPTETATKRANAWAMEAEMRPAGVAAPSLTKMKVEMNSAKPAFKVSG*

>peptide 2 (69 aa)
EELSDDVNDTTEEGDVTTNEGTEGDSGVDMSTGDVSTNGDSNKESECMGDGGRDETGRGGSTVVDKDEG*

Sequence

>CNT30146554
CGAGGAGTTGAGCGATGATGTAAACGATACCACGGAGGAGGGTGATGTTACCACCAACGAAGGCACCGAAGGTGACAGCGGGGTTGACATGTCCACCGGA
GATGTTAGCACCAACGGAGACAGCAACAAAGAGAGCGAATGCATGGGCGATGGAGGCAGAGATGAGACCGGCAGGGGTGGCAGCACCGTCGTTGACAAAG
ATGAAGGTTGAGATGAACTCAGCCAAACCTGCTTTCAAGGTGTCTGGGTGAGTTGCCTCTTGAGGTGTTCCTACGGCGATGTTTCTGATAGGCATGTTGA
AATAATCGCTTTTGTTAACAAACACTCACTCTTTTTTTTTAGTTACTGTGAAAGCGCTTTCTGGTTTTCGC