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Detailed information on CNT30579360


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678075Echinochloa crusgalliSetaria viridis21.5825.5496.95131forward
CNT30549654Echinochloa crusgalliIpomoea triloba28.1747.585.96171forward
CNT30628402Echinochloa crusgalliVigna unguiculata24.7117.7784150forward
CNT30708714Echinochloa crusgalliGlycine max27.183787.27165forward
CNT30223457Echinochloa crusgalliHordeum vulgare24.7150.3493.33150forward
CNT30568703Echinochloa crusgalliActinidia chinensis30.4811.1682.7185forward
CNT30592382Echinochloa crusgalliMusa acuminata32.4533.1190.86197forward
CNT30542059Echinochloa crusgalliBrassica napus23.0617.5482.14140forward
CNT30239005Echinochloa crusgalliBrassica oleracea21.9113.3181.95133forward
CNT30552975Echinochloa crusgalliOryza glaberrima29.1630.5297.74177forward
CNT30247019Echinochloa crusgalliAvena sativa36.4117.9890.95221forward
CNT30135940Echinochloa crusgalliLolium perenne33.6138.3593.14204forward
CNT30620034Echinochloa crusgalliCajanus cajan31.4718.1787.96191forward
CNT30595700Echinochloa crusgalliOryza meridionalis8.2423.369250forward
CNT3057342Echinochloa crusgalliAmborella trichopoda23.8920.7782.76145forward
CNT30331344Echinochloa crusgalliDioscorea rotundata20.117.9787.7122forward
CNT30575580Echinochloa crusgalliOryza barthii16.6430.1597.03101forward
CNT30176366Echinochloa crusgalliVigna angularis17.321.9287.62105forward
CNT30113763Echinochloa crusgalliFicus carica38.0620.8784.85231forward
CNT3050798Echinochloa crusgalliCucumis sativus11.220.5485.2968forward

Expression of CNT30579360

Peptides detected in this lncRNA

>peptide 1 (78 aa)
ECVERTETRSSELLRRGDLDKLLASKCTNFTEARSNSRRLQCSKLIDRSKPHAIASGAAAESGCYISWRSMRCNAMQN*

>peptide 2 (69 aa)
MIIKRTELNRLLLRRRRYRSLWQSSLSSRWWGAARGCRWGARRWRSGGGSTPRWSPAAGRSSTGGRGTG*

>peptide 3 (84 aa)
MHKFYRSKIEFTAVTVFQTDRSKQTTCDCERRSSRVWVLHFMAVDAMQCNAKLNGGLDDNQTDGVEPASAAAEKVPEPLAELAQ*

>peptide 4 (32 aa)
MRLRAAQQQSLGVTFHGGRCDAMQCKTKRRTG*

>peptide 5 (48 aa)
MLPPTKAPKVTAGFTWPPEMLAPTDTATNRAKACATAAEIRPAGVVAPP

Sequence

>CNT30579360
CGAGTGCGTAGAAAGAACAGAAACACGATCATCAGAGCTGCTACGTCGTGGGGACTTGGATAAATTACTCGCGAGCAAATGCACAAATTTTACAGAAGCA
AGATCGAATTCACGGCGGTTACAGTGTTCCAAACTGATCGATCGAAGCAAACCACATGCGATTGCGAGCGGCGCAGCAGCAGAGTCTGGGTGTTACATTT
CATGGCGGTCGATGCGATGCAATGCAATGCAAAACTAAACGGCGGACTGGATGATAATCAAACGGACGGAGTTGAACCGGCTTCTGCTGCGGCGGAGAAG
GTACCGGAGCCTCTGGCAGAGCTCGCTCAGTAGTCGGTGGTGGGGAGCTGCTCGTGGGTGCCGGTGGGGAGCCCGCCGGTGGAGAAGCGGAGGAGGAAGC
ACGCCACGGTGGAGCCCAGCAGCTGGGCGATCCAGTACAGGAGGCCGCGGAACAGGGTGATGTTGCCGCCCACGAAGGCGCCGAAGGTCACGGCCGGGTT
CACGTGGCCGCCGGAGATGTTGGCGCCGACGGACACGGCCACGAACAGGGCGAAGGCGTGCGCCACCGCGGCGGAGATCAGGCCAGCGGGGGTCGTTGCG
CCGCCGC