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Detailed information on CNT30393023


BLAST search results

BLAST vs Swiss-Prot:
sp|O64964|TIP11_MAIZE, E-value = 3e-32

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30641419Triticum turgidumNymphaea colorata20.5915.2884.4490forward
CNT30549654Triticum turgidumIpomoea triloba22.6527.589.999forward
CNT30524797Triticum turgidumPhaseolus vulgaris28.1517.6584.55123forward
CNT30628402Triticum turgidumVigna unguiculata28.1514.5786.18123forward
CNT30712600Triticum turgidumGlycine max32.4919.0386.62142forward
CNT3042438Triticum turgidumPrunus dulcis28.8315.3188.1126forward
CNT30178846Triticum turgidumSecale cereale29.7514.5980.77130forward
CNT3084635Triticum turgidumVigna radiata25.414.0986.49111forward
CNT30542059Triticum turgidumBrassica napus25.8614.1684.07113forward
CNT30239005Triticum turgidumBrassica oleracea25.6311.2183.93112forward
CNT30310223Triticum turgidumCamelina sativa25.8617.2582.3113forward
CNT30721484Triticum turgidumTriticum spelta48.9729.27100214forward
CNT30352266Triticum turgidumEragrostis tef26.0921.5185.96114forward
CNT30619906Triticum turgidumCajanus cajan17.8535.4597.4478forward
CNT30154895Triticum turgidumPrunus persica23.813.7787.5104forward
CNT30706772Triticum turgidumPrunus avium28.8335.988.1126forward
CNT30102065Triticum turgidumOryza rufipogon25.1718.5283.64110forward
CNT30113801Triticum turgidumFicus carica28.3830.0291.13124forward

Expression of CNT30393023

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MTPARPPPMRGPTQYTHWYPHSQLTRAGPKETAGRKQAAVEPRSWAIQ*

>peptide 2 (59 aa)
EASSAYMHHGMRRPREKLKRLMTGRKGETKHHTDGWTATPILSSLLSSRWWGAARGCGR*

>peptide 3 (46 aa)
RGELRIHASWHAATARETKTTDDGKEGGDEASHGRMDGDSDPKLAA*

Sequence

>CNT30393023
CGAGGCGAGCTCCGCATACATGCATCATGGCATGCGGCGACCGCGCGAGAAACTAAAACGACTGATGACGGGAAGGAAGGGGGAGACGAAGCATCACACG
GACGGATGGACGGCGACTCCGATCCTAAGCTCGCTGCTTAGTAGTCGGTGGTGGGGAGCTGCTCGTGGGTGCGGGAGATGAAGAGCAGCTCGTAGATGAC
GCCGGCGAGGCCGCCGCCGATGAGGGGGCCGACCCAGTACACCCACTGGTACCCCCACTCCCAGCTGACGAGGGCGGGGCCGAAGGAGACGGCGGGGAGG
AAGCAGGCGGCGGTGGAGCCCAGGAGCTGGGCGATCCAGTAGAGCAGGCCGCGGAAGAGGGTGATGTTGCCGCCCACGAAGGCGCCGAAGGTCACGGCCG
GGTTCACGTGCCCGCCGGAGATGTTGGCGCCCACGGA