Detailed information on CNT30698180


BLAST search results

BLAST vs Swiss-Prot:
sp|P0DO54|TIP12_MUSAC, E-value = 1e-47

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30382128Quercus lobataManihot esculenta31.4927.6985.19108forward
CNT30542059Quercus lobataBrassica napus32.9414.1684.96113forward
CNT30239005Quercus lobataBrassica oleracea32.6511.2184.82112forward
CNT30552975Quercus lobataOryza glaberrima39.3623.2880.74135forward
CNT30146554Quercus lobataMedicago truncatula23.6221.8386.4281forward
CNT30310223Quercus lobataCamelina sativa32.9417.2583.19113forward
CNT30420453Quercus lobataPapaver somniferum32.0712.3285.45110forward
CNT30706772Quercus lobataPrunus avium27.727.0783.1695forward
CNT30113801Quercus lobataFicus carica33.5327.8584.35115forward
CNT3050798Quercus lobataCucumis sativus31.232.3385.98107forward

Expression of CNT30698180

Peptides detected in this lncRNA

>peptide 1 (59 aa)
QATRGKLKEQASHSRAKELSNPVEDTTKEVDMATKEGPKGDSRVDVATGDVGGDCHSNK*

>peptide 2 (34 aa)
MCQRGGYKPRRCGGGIFSELIIGHARTLTSKHKY*

>peptide 3 (35 aa)
MLAEIATATNKPKACANAAATSPAGVVEASSVSLL*

Sequence

>CNT30698180
CAAGCCACCAGAGGAAAACTTAAGGAGCAAGCAAGCCACAGTAGAGCCAAGGAGTTGAGCAATCCAGTAGAGGATACCACGAAGGAGGTTGATATGGCCA
CCAAGGAAGGCCCCAAAGGTGACAGCCGGGTTGACGTGGCCACCGGAGATGTTGGCGGAGATTGCCACAGCAACAAATAAGCCAAAAGCATGTGCCAACG
CGGCGGCTACAAGCCCCGCAGGTGTGGTGGAGGCATCTTCAGTGAGCTTATTATAGGCCATGCCAGAACCCTCACCAGCAAACACAAATATTAGTGTACT
GATGAACTCAGCTAATGCACCCCTTAGTGCATCCGGCTGATAG