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Detailed information on CNT30727224


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FY14|TIP1_MEDTR, E-value = 1e-65

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30549654Corchorus capsularisIpomoea triloba21.736.9484.21133forward
CNT30374560Corchorus capsularisArabidopsis thaliana37.8543.5381.9232forward
CNT30382128Corchorus capsularisManihot esculenta14.1922.3187.3687forward
CNT30628402Corchorus capsularisVigna unguiculata54.6539.6981.19335forward
CNT30542059Corchorus capsularisBrassica napus36.5428.0781.7224forward
CNT3075983Corchorus capsularisBrassica juncea33.6129.3980.58206forward
CNT30620034Corchorus capsularisCajanus cajan37.1921.6983.77228forward
CNT30706772Corchorus capsularisPrunus avium26.145.5883.12160forward
CNT30113763Corchorus capsularisFicus carica43.5624.1279.03267forward
CNT3050798Corchorus capsularisCucumis sativus11.4221.1587.1470forward

Expression of CNT30727224

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MLPPTKAPKVTAGLTWPPEMLAAIETATKRPKA*

>peptide 2 (47 aa)
MAAATRPAGVVAPLLVSWLKAIPEPEPAKTKTSVEMNSANPCLRVPG*

>peptide 3 (32 aa)
MIKIKRWGEVGSVCLREKRVFLVSGLVSTSQL*

Sequence

>CNT30727224
CCGTAACATAACCCAAGTATTAAATATTGATAATAAAAGAAAAAAACTTAACTAACTACTTATATCGTCATAACGGAAATAACTGATTTTACCCTGCCGG
CGGTGGCGAATGCGAGTAAAATGAGAGCGACGACAGAACCAAGGAGTTGGGCGATGATGTAGACGAGGCCACGGAAGAGAGTGATGTTACCGCCAACGAA
AGCACCGAAGGTGACGGCAGGGTTGACGTGGCCACCGGAAATGTTGGCGGCAATTGAGACAGCGACGAAAAGGCCGAAGGCATGAGCTATGGCGGCGGCG
ACAAGACCGGCGGGGGTGGTTGCTCCGTTGCTGGTGAGCTGGTTGAAGGCGATACCGGAGCCTGAACCGGCAAAGACGAAGACGAGTGTTGAGATGAACT
CAGCCAACCCTTGCTTAAGAGTACCGGGGTGAGTTGCCTCCTCGAACCGGCCGACGGCGATGTTTCTGATCGGCATGTTTACCGTATGATCAAAATCAAG
CGGTGGGGGGAAGTGGGGAGTGTTTGTTTGAGAGAGAAGAGAGTGTTTTTGGTCTCTGGTCTGGTCTCCACTTCTCAGCTTTAGCTCCTACTTATATTTG
AAACGGGTGGTCC