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Detailed information on CNT30706772


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30519799Prunus aviumSetaria italica23.9313.9890.4884forward
CNT30549654Prunus aviumIpomoea triloba36.7535.8388.37129forward
CNT30514098Prunus aviumJuglans regia32.7629.0482.61115forward
CNT30698180Prunus aviumQuercus lobata27.0727.783.1695forward
CNT30373960Prunus aviumArabidopsis thaliana28.7719.3982.18101forward
CNT30618329Prunus aviumSesamum indicum21.946.2484.4277forward
CNT30727224Prunus aviumCorchorus capsularis45.5826.183.12160forward
CNT30382128Prunus aviumManihot esculenta31.3428.2181.82110forward
CNT30524797Prunus aviumPhaseolus vulgaris46.7223.5384.76164forward
CNT30628402Prunus aviumVigna unguiculata46.7219.4386.59164forward
CNT30712600Prunus aviumGlycine max52.4224.6688.59184forward
CNT30178846Prunus aviumSecale cereale34.4713.5881.82121forward
CNT30223457Prunus aviumHordeum vulgare30.7736.2482.41108forward
CNT30393023Prunus aviumTriticum turgidum35.928.8388.1126forward
CNT30568703Prunus aviumActinidia chinensis62.1113.1680.73218forward
CNT30592382Prunus aviumMusa acuminata35.0420.6784.55123forward
CNT3084637Prunus aviumVigna radiata27.078.2591.5895forward
CNT30542059Prunus aviumBrassica napus38.1816.7982.84134forward
CNT30239005Prunus aviumBrassica oleracea29.3410.3183.5103forward
CNT30552975Prunus aviumOryza glaberrima30.4818.4590.65107forward
CNT30146554Prunus aviumMedicago truncatula33.0531.2784.48116forward
CNT30256642Prunus aviumAvena sativa21.9414.9593.5177forward
CNT30660459Prunus aviumTriticum dicoccoides23.6512.8387.9583forward
CNT30310223Prunus aviumCamelina sativa31.6216.9586.49111forward
CNT3075983Prunus aviumBrassica juncea33.6216.8383.05118forward
CNT30135940Prunus aviumLolium perenne35.923.6886.51126forward
CNT30721484Prunus aviumTriticum spelta23.0811.0888.8981forward
CNT30352266Prunus aviumEragrostis tef21.3714.1585.3375forward
CNT30361046Prunus aviumSorghum bicolor23.081386.4281forward
CNT30619906Prunus aviumCajanus cajan38.1860.9185.82134forward
CNT30595700Prunus aviumOryza meridionalis15.6725.787.2755forward
CNT30370544Prunus aviumOryza glumipatula34.4714.384.3121forward
CNT3057335Prunus aviumAmborella trichopoda21.3721.5586.6775forward
CNT30331344Prunus aviumDioscorea rotundata33.3317.2389.74117forward
CNT30102065Prunus aviumOryza rufipogon34.4720.3785.12121forward
CNT30576737Prunus aviumOryza barthii34.4727.8284.3121forward
CNT30579749Prunus aviumEchinochloa crusgalli30.4817.4689.72107forward
CNT30176366Prunus aviumVigna angularis32.1923.5988.5113forward
CNT30113856Prunus aviumFicus carica52.1418.2390.71183forward
CNT3050798Prunus aviumCucumis sativus26.2127.7982.6192forward

Expression of CNT30706772

Peptides detected in this lncRNA

>peptide 1 (91 aa)
MPRRREILPPTKAPKVTAGLTCPPEMLAAMETATKRPNAWAIAAAMRPAGVRVVRLLGSANGNVPDRHRRKMIKIGRWRFAAELSCVWSLTT

>peptide 2 (97 aa)
LVVGDELEEPAGDGGPEELGDPVEDAAEEGDITADEGAEGDGGVDVSAGDVGSDGDGDEEAECVGYSGGDEACWRPGGTSPRVGQRQCSGSASSEDD*

Sequence

>CNT30706772
CTGGTAGTTGGTGACGAACTTGAGGAGCCCGCAGGCGACGGTGGCCCCGAGGAGCTGGGCGATCCAGTAGAGGATGCCGCGGAGGAGGGAGATATTACCG
CCGACGAAGGCGCCGAAGGTGACGGCGGGGTTGACGTGTCCGCCGGAGATGTTGGCAGCGATGGAGACGGCGACGAAGAGGCCGAATGCGTGGGCTATAG
CGGCGGCGATGAGGCCTGCTGGCGTCCGGGTGGTACGTCTCCTCGGGTCGGCCAACGGCAATGTTCCGGATCGGCATCGTCGGAAGATGATTAAGATCGG
ACGGTGGAGATTCGCTGCAGAATTAAGCTGCGTATGGTCACTCACAACTAC