Detailed information on CNT30229501


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524746Ananas comosusPhaseolus vulgaris20.3713.3880.99121forward
CNT30542059Ananas comosusBrassica napus20.5415.2985.25122forward
CNT30239005Ananas comosusBrassica oleracea20.5412.2185.25122forward
CNT30612709Ananas comosusArabis alpina20.5411.4782.79122forward
CNT30364799Ananas comosusSorghum bicolor20.7116.1686.99123forward
CNT30114821Ananas comosusEutrema salsugineum20.7111.7783.74123forward

Expression of CNT30229501

Peptides detected in this lncRNA

>peptide 1 (57 aa)
GEKKKKKQRRERERESEKKNSFFLKLFFPRFNRSSSRNSTQHYEQRAGVDDIDDDHE*

>peptide 2 (43 aa)
MHEIDSLRKNRKLTTSTACKDREFYAWKGGGLAGGCGVMIDDQ*

>peptide 3 (36 aa)
MAAMAPPRRMLAPTMKPMAIGAMVPRLPRLGSMAVA*

Sequence

>CNT30229501
GGGGAAAAAAAAAAGAAAAAACAGAGGAGAGAGAGAGAGAGAGAGAGTGAGAAAAAAAACTCTTTTTTTTTAAAGCTCTTTTTTCCAAGGTTCAACAGAA
GCAGCAGCAGAAACTCAACTCAGCATTATGAACAAAGAGCAGGAGTAGACGACATCGACGACGACCACGAATGATCGATCGGAAATAAAAGAAGATGACT
GAGAAAGAAAGACTCGAAATCAATACACCACCACCACCGATCGAACAACAGAATTAAACCATGCACGAGATAGATTCATTAAGAAAAAACAGGAAATTAA
CGACGAGTACTGCATGCAAGGATCGAGAATTTTATGCATGGAAAGGAGGCGGCTTGGCTGGGGGCTGTGGGGTGATGATCGATGATCAGTAGTCGGGCGG
GGGGATCTGCTCGTAGTTGGGGGTGATGAAGAAGACGTCGTAGACGATGGCGGCGATGGCGCCGCCCAGGAGGATGTTGGCGCCGACTATGAAGCCGATG
GCGATCGGGGCGATGGTGCCGAGGCTGCCCCGCTTGGGGTCGATGGCCGTGGCGTAGACGGTGTAGACGAGGCCGAAGGTCATGACGATCTCCA