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Detailed information on CNT30623609


BLAST search results

BLAST vs Swiss-Prot:
sp|P50156|TIP11_ORYSJ, E-value = 2e-65

BLAST vs NONCODE:
NONGMAT001209, E-value = 7e-12

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30547910Daucus carotaIpomoea triloba22.2419.584.8125forward
CNT30518137Daucus carotaJuglans regia42.3537.7881.51238forward
CNT30373597Daucus carotaArabidopsis thaliana43.2439.0780.66243forward
CNT30618329Daucus carotaSesamum indicum43.2419.7185.19243forward
CNT30524746Daucus carotaPhaseolus vulgaris40.3925.1180.18227forward
CNT30503973Daucus carotaNicotiana attenuata25.0920.6482.27141forward
CNT30708635Daucus carotaGlycine max42.1741.6580.17237forward
CNT30635699Daucus carotaCapsicum annuum35.418.9979.9199forward
CNT3093986Daucus carotaSolanum tuberosum31.3210.1680.11176forward
CNT30223457Daucus carotaHordeum vulgare26.3349.6681.76148forward
CNT30392788Daucus carotaTriticum turgidum20.828.9984.62117forward
CNT30586176Daucus carotaMusa acuminata25.2723.2880.99142forward
CNT30542059Daucus carotaBrassica napus30.7821.6880.92173forward
CNT30239005Daucus carotaBrassica oleracea30.7817.3280.92173forward
CNT30509931Daucus carotaSolanum lycopersicum32.389.4880.22182forward
CNT30552975Daucus carotaOryza glaberrima24.9124.1480.71140forward
CNT30146734Daucus carotaMedicago truncatula31.3228.4882.39176forward
CNT30247019Daucus carotaAvena sativa23.1310.5882.31130forward
CNT30310654Daucus carotaCamelina sativa41.9960.0580.08236forward
CNT30612709Daucus carotaArabis alpina22.7812.0382.03128forward
CNT30136463Daucus carotaLolium perenne29.7222.7882.63167forward
CNT301194Daucus carotaZea mays20.8223.4582.91117forward
CNT30229576Daucus carotaAnanas comosus34.1626.9779.17192forward
CNT3066802Daucus carotaLeersia perrieri29.1869.284.76164forward
CNT30369235Daucus carotaOryza glumipatula30.7815.3483.24173forward
CNT30423736Daucus carotaPapaver somniferum28.1119.3281.65158forward
CNT30570838Daucus carotaVitis vinifera23.4931.3583.33132forward
CNT3057351Daucus carotaAmborella trichopoda31.3220.6880.68176forward
CNT30579791Daucus carotaEchinochloa crusgalli25.4411.3580.42143forward
CNT30334320Daucus carotaCynara cardunculus38.4328.0278.7216forward
CNT3050792Daucus carotaCucumis sativus32.3818.2481.32182forward
CNT30114821Daucus carotaEutrema salsugineum24.3813.1181.75137forward

Expression of CNT30623609

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MDAPVKAPPARMLAPTMKPMAMGAMIPRSPFFGSTATA*

Sequence

>CNT30623609
TGAAAAATTTATTAATTGAAAGACAATAATGCTTAGGGAAAAGTTGATAGCTGCAAATTGAACAAATAAATGACACAGGATAGAGCTCAACATTGATCAG
GCGAAAACATAAGCAGGAAATCGAAATGAAAACGGACTAAATAAATACAAACGAGAACGAGATTAATCGACCGAAATAAAAACAACTATCTAGTAATCAG
TGGTGGGCAATGGCTCGTGACTGCCACCGATGAAGATAAGCTCGTAGATGATTCCAGCCAGCTGGCCGCCACCAACGAGAGGTCCGGCCCAGTAGACCCA
GTGGTTAGTCCAGTCCCAGCTGACCAGAGCAGGCCCAAATGAGACGGCAGGGTTCATGGATGCCCCGGTGAAGGCACCGCCGGCTAGAATGTTGGCTCCC
ACGATGAAACCGATGGCAATGGGTGCGATGATTCCGAGGTCTCCCTTCTTTGGGTCGACGGCGACAGCGTAGACGGTGTAAACCAGTCCGAATGTCATCA
CGATCTCGAACACGAAGGCACTCCACACTGACACGCCCGACAATGCAAAGGCTGATGTTGGC