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Detailed information on CNT3084637


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FY14|TIP1_MEDTR, E-value = 1e-104

BLAST vs NONCODE:
NONGMAT001209, E-value = 2e-72

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30549654Vigna radiataIpomoea triloba10.6934.1791.06123forward
CNT30514098Vigna radiataJuglans regia23.8969.4479.27275forward
CNT30373597Vigna radiataArabidopsis thaliana30.5856.5980.11352forward
CNT30618415Vigna radiataSesamum indicum18.0733.3379.81208forward
CNT30727223Vigna radiataCorchorus capsularis25.7221.182.43296forward
CNT30524746Vigna radiataPhaseolus vulgaris32.4141.2694.1373forward
CNT30628402Vigna radiataVigna unguiculata33.846.0997.69389forward
CNT30708635Vigna radiataGlycine max30.3261.3489.4349forward
CNT30223457Vigna radiataHordeum vulgare8.4332.5584.5497forward
CNT30392788Vigna radiataTriticum turgidum20.7618.3680.75239forward
CNT30568703Vigna radiataActinidia chinensis22.515.6379.54259forward
CNT30542059Vigna radiataBrassica napus22.9433.0879.92264forward
CNT30239005Vigna radiataBrassica oleracea22.9426.4379.92264forward
CNT30146734Vigna radiataMedicago truncatula24.0744.8282.31277forward
CNT30310654Vigna radiataCamelina sativa23.0267.4378.49265forward
CNT3075983Vigna radiataBrassica juncea19.231.5381221forward
CNT30135940Vigna radiataLolium perenne9.8221.2484.96113forward
CNT30620034Vigna radiataCajanus cajan26.5929.1288.24306forward
CNT30423736Vigna radiataPapaver somniferum14.5120.4281.44167forward
CNT30706772Vigna radiataPrunus avium8.2527.0791.5895forward
CNT30643380Vigna radiataCannabis sativa8.8621.6686.27102forward
CNT30113763Vigna radiataFicus carica26.4127.4684.87304forward
CNT3050792Vigna radiataCucumis sativus27.2831.4681.85314forward

Expression of CNT3084637

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MVHSANNDTSMVDQVRKRETERGCTNDDNLT*

>peptide 2 (38 aa)
MAAPEKAPPNKMLAPTMKPMAMGAMVPKLPLLGSTAVA*

>peptide 3 (35 aa)
MLAPTETATKRPNAWAMEAERSPAGEVAALSVSLL*

Sequence

>CNT3084637
ATGGTACATTCAGCCAATAATGATACATCCATGGTGGACCAGGTGAGAAAGAGAGAGACAGAGAGAGGATGCACAAATGATGATAATTTAACTTAAAAGA
GAACATGATCATCAACCATCCAACCAAAGATCAACGTCCACCGATTCAACACGAAAGGAACAACCCGCGAAAGTAGAATGAAGAGAAACACAAGGAAAAA
AAAACATACACAGAAGAAAATCGAAGGTGAAATTCAATAATAGACAATTTTTTTTTTTTGTTTATTTTTCTGATTTCGGGTCTAGTAGTCAGTGGTTGGG
AGCTGCTCGTGGGTGTGGCTGATGAAGACGACCTCGTAGATGACTCCGGCGATGCCACCACCGATGAGAGGGCCGACCCAGTAGATCCAGTTGTTTTCCC
AGGTCCAGCTAACAACGGCAGGTCCGAATGTGACGGCAGGGTTCATGGCTGCTCCGGAGAAGGCCCCACCCAACAAAATGTTAGCGCCAACGATGAAACC
AATGGCGATGGGAGCAATGGTTCCCAAACTACCCCTCTTGGGGTCAACGGCGGTAGCGTAGACAGTGTACACCAAACCGAAAGTCAACACGATCTCCAAC
ACCAAAGCGTTACCCACTCCAACTCCAGCTGAGAGTGCAAATGCGGGAACGGTCTGCAAGCATCGGAACAAAACTCGTATTAGTTCAACTTAAAAGTTAG
TTATGTAAAGCAAGTAACGGTAATAACGGTCTTACGGAGGAGGTCACGAAGGCCAGGAGGAGGGAGGAAGGTGATGTTGCCTCCGACGAAGGCGCCGAAG
GTGACGGCGGGGTTCACGTGACCTCCGGAGATGTTGGCGCCGACGGAGACGGCGACAAAAAGGCCGAATGCGTGGGCGATGGAGGCGGAGAGGAGTCCGG
CAGGTGAGGTGGCGGCGTTGTCAGTGAGCTTGTTGTAGGCGATGCCGGAGCCTGAGCCGGCGAACACGAAGATGAAGGTGGAGATGAACTCGGCCAAAGC
CGCCTTCAACGTGTCGGGGTGAGTGGCCTCCTCGGGCCTTCCGATGGCGATGTTTCTGATCGGCATCTTCAATCGACGGTGGTGATGATTACGACTGGTG
AAAGATGAAGTGAACACCGAGATCACTCACTCAAATCACTCTCTGTTTCGC