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Detailed information on CNT3057351


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677458Amborella trichopodaSetaria viridis21.542.6683.06183forward
CNT30521388Amborella trichopodaSetaria italica19.3926.1180.61165forward
CNT30518137Amborella trichopodaJuglans regia23.9732.3878.43204forward
CNT30375250Amborella trichopodaArabidopsis thaliana19.5140.1980.72166forward
CNT30618329Amborella trichopodaSesamum indicum21.741581.08185forward
CNT30524746Amborella trichopodaPhaseolus vulgaris38.7836.579.09330forward
CNT30628432Amborella trichopodaVigna unguiculata19.2720.2281.1164forward
CNT30708635Amborella trichopodaGlycine max38.785877.58330forward
CNT30296934Amborella trichopodaTriticum aestivum21.8634.5783.87186forward
CNT30223457Amborella trichopodaHordeum vulgare17.515083.22149forward
CNT30392788Amborella trichopodaTriticum turgidum27.8518.283.12237forward
CNT30542059Amborella trichopodaBrassica napus23.2724.8184.34198forward
CNT30239005Amborella trichopodaBrassica oleracea23.2719.8284.34198forward
CNT30552975Amborella trichopodaOryza glaberrima18.2126.7283.23155forward
CNT30146734Amborella trichopodaMedicago truncatula22.4430.9181.15191forward
CNT30443527Amborella trichopodaAegilops tauschii19.9831.0279.41170forward
CNT30254829Amborella trichopodaAvena sativa19.9823.9880170forward
CNT30310654Amborella trichopodaCamelina sativa20.845.0480.79177forward
CNT30136463Amborella trichopodaLolium perenne27.1431.5182.25231forward
CNT301194Amborella trichopodaZea mays31.0252.9182.2264forward
CNT30229576Amborella trichopodaAnanas comosus23.3827.9581.91199forward
CNT3066802Amborella trichopodaLeersia perrieri20.4573.4284.48174forward
CNT30623609Amborella trichopodaDaucus carota20.6831.3280.68176forward
CNT30364799Amborella trichopodaSorghum bicolor19.6221.9479.64167forward
CNT30369235Amborella trichopodaOryza glumipatula22.4416.9385.86191forward
CNT30101968Amborella trichopodaOryza rufipogon20.2122.6379.65172forward
CNT30579294Amborella trichopodaEchinochloa crusgalli26.5631.5280.09226forward
CNT30334320Amborella trichopodaCynara cardunculus31.2634.578.95266forward
CNT3050792Amborella trichopodaCucumis sativus38.7833.0781.52330forward

Expression of CNT3057351

Peptides detected in this lncRNA

>peptide 1 (30 aa)
KTLKKASIDCDFDHSITGNNERFRTQYHGK*

>peptide 2 (42 aa)
MSQQGSHVHRKYSLRPTQRQIVRRRAPTTPQRAPPAWWMHCQ*

>peptide 3 (52 aa)
MLPPTKAPNVTAGFTCPPEIFAPTDTATNSPKACANDAATSPAGVVDALSVSL

>peptide 4 (54 aa)
MQIVMIQKTKGPRIINNSNYRSCETKEKEKKKKHHCNNTKHREIKEERKALMGT*

>peptide 5 (68 aa)
MSGPAQYTQWESHDQLTTAGPKETAGFMEAPVKAPPAKMLAPTMKPIAIGAIIPRLPFFGSIAVAYTV*

Sequence

>CNT3057351
AAAAACATTAAAAAAAGCTTCAATCGATTGCGATTTCGATCACAGCATCACAGGAAATAACGAGCGATTTCGAACACAGTATCACGGGAAATAACGAACC
CAACATTGCGAATGCAAATCGTGATGATCCAGAAAACAAAGGGACCACGCATAATTAACAACTCCAATTACAGGTCATGTGAAACAAAAGAGAAGGAGAA
GAAGAAGAAGCACCACTGCAACAATACAAAACACAGAGAAATAAAAGAAGAAAGAAAAGCATTGATGGGGACCTAGTAGTCGGTGGTGGGGAGTTGCTCG
TGGGTGTGAGAGATGAATACAGTCTCGTAAATAAGCCCTGCGAGGCCACCACCGATGAGTGGTCCAGCCCAGTACACCCAGTGGGAGTCCCATGACCAGC
TCACGACGGCGGGGCCGAAGGAGACCGCGGGGTTCATGGAGGCACCGGTGAAGGCGCCACCGGCCAAGATGTTAGCCCCTACGATGAAACCGATCGCGAT
CGGTGCGATTATACCAAGGCTGCCCTTCTTTGGGTCGATTGCGGTGGCGTACACAGTGTAGACGAGGCCGAAGGTCATAACGATCTCAAACACGAATGCG
TTCCAAACGGAGACACCCGACAAGCCGAAGGCGGAGGTGGTCAGTCCACCGGAGCTGGGCGATCCAGTAAAGGATTCCGCGGAGCAGAGTGATGTTGCCG
CCCACAAAGGCACCAAATGTCACAGCAGGGTTCACATGTCCACCGGAAATATTCGCTCCGACCGACACAGCGACAAATAGTCCGAAGGCGTGCGCCAACG
ACGCCGCAACGAGCCCCGCCGGCGTGGTGGATGCATTGTCAGTAAGCTTGT