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Detailed information on CNT30113801


BLAST search results

BLAST vs Swiss-Prot:
sp|P50156|TIP11_ORYSJ, E-value = 3e-38

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691498Ficus caricaOryza sativa21.0743.583.9187forward
CNT30678075Ficus caricaSetaria viridis27.8522.4288.7115forward
CNT30519799Ficus caricaSetaria italica20.113.8189.1683forward
CNT30549654Ficus caricaIpomoea triloba35.5940.8389.12147forward
CNT30698180Ficus caricaQuercus lobata27.8533.5384.35115forward
CNT30628532Ficus caricaVigna unguiculata69.4970.8682.58287forward
CNT3042438Ficus caricaPrunus dulcis39.2319.6891.98162forward
CNT3096857Ficus caricaSolanum tuberosum14.0420.7987.9358forward
CNT30178846Ficus caricaSecale cereale31.9614.8183.33132forward
CNT30293493Ficus caricaTriticum aestivum23.4915.1387.6397forward
CNT30223457Ficus caricaHordeum vulgare32.4544.9784.33134forward
CNT30393023Ficus caricaTriticum turgidum30.0228.3891.13124forward
CNT30592382Ficus caricaMusa acuminata45.5231.684.04188forward
CNT30542059Ficus caricaBrassica napus27.3614.1684.07113forward
CNT30239005Ficus caricaBrassica oleracea27.1211.2183.93112forward
CNT30552975Ficus caricaOryza glaberrima38.7427.5988.75160forward
CNT30146490Ficus caricaMedicago truncatula17.9220.5689.1974forward
CNT30442853Ficus caricaAegilops tauschii34.3821.9183.1142forward
CNT30660459Ficus caricaTriticum dicoccoides23.4914.9989.6997forward
CNT30310223Ficus caricaCamelina sativa27.3617.2586.73113forward
CNT30135940Ficus caricaLolium perenne47.737.0385.79197forward
CNT30680513Ficus caricaTriticum urartu17.1927.5285.9271forward
CNT30721484Ficus caricaTriticum spelta27.1215.3288.39112forward
CNT30352266Ficus caricaEragrostis tef38.2629.8181.01158forward
CNT30361046Ficus caricaSorghum bicolor28.3318.7885.47117forward
CNT30595700Ficus caricaOryza meridionalis21.0740.6585.0687forward
CNT30370544Ficus caricaOryza glumipatula41.6520.3383.72172forward
CNT30154895Ficus caricaPrunus persica38.9821.3290.06161forward
CNT3057335Ficus caricaAmborella trichopoda23.7328.1685.7198forward
CNT30331344Ficus caricaDioscorea rotundata29.7818.1191.06123forward
CNT30102065Ficus caricaOryza rufipogon34.3823.9185.21142forward
CNT30576737Ficus caricaOryza barthii34.3832.6484.51142forward
CNT30117062Ficus caricaOryza nivara21.3138.2684.0988forward
CNT3050751Ficus caricaCucumis sativus36.815.4582.89152forward

Expression of CNT30113801

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MPRRRVMLPPTKAPKVTAGLTCPPEMLAATATATKRAKPWAMAAEMSPTRQTRRSRWR*

>peptide 2 (94 aa)
QAAGGELEEEDGDGGAEELGDPVEDAAEEGDVAADEGAKGDGGVDVSAGDVGGDGDGHEEGEAVGDGGGNEPDPANTKIKVEMNSANAALRASG*

Sequence

>CNT30113801
CCAAGCCGCCGGTGGAGAACTTGAGGAGGAGGACGGCGACGGTGGAGCCGAGGAGCTGGGCGATCCAGTAGAGGATGCCGCGGAGGAGGGTGATGTTGCC
GCCGACGAAGGCGCCAAAGGTGACGGCGGGGTTGACGTGTCCGCCGGAGATGTTGGCGGCGACGGCGACGGCCACGAAGAGGGCGAAGCCGTGGGCGATG
GCGGCGGAAATGAGCCCGACCCGGCAAACACGAAGATCAAGGTGGAGATGAACTCGGCCAACGCCGCCTTGAGAGCGTCGGGGTGAGTCGCCTCCTCCCG
ACCACCGATGGCGATGTTTCGGATCGGCATATTTTTAATGATTTAAGTAATGACGAACGGAAAGTGATTTCGTTTCTCACCGCCGAGAAGGTGGAGAGTT
TAGCTAGTAGCAC