Detailed information on CNT30708652


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FY14|TIP1_MEDTR, E-value = 2e-53

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30375776Glycine maxArabidopsis thaliana61.6131.9981.68191forward
CNT30618415Glycine maxSesamum indicum67.133.3381.25208forward
CNT30727222Glycine maxCorchorus capsularis65.4838.3782.27203forward
CNT30524765Glycine maxPhaseolus vulgaris88.0634.0490.11273forward
CNT30568703Glycine maxActinidia chinensis61.2911.4781.58190forward
CNT3084535Glycine maxVigna radiata91.9465.3788.77285forward
CNT30542059Glycine maxBrassica napus63.5524.6981.22197forward
CNT30256642Glycine maxAvena sativa20.9712.6293.8565forward
CNT3075983Glycine maxBrassica juncea63.5528.181.73197forward
CNT30154882Glycine maxPrunus persica21.9412.8191.1868forward
CNT30116026Glycine maxOryza nivara20.3211.9888.8963forward
CNT30334320Glycine maxCynara cardunculus24.849.9985.7177forward
CNT3050751Glycine maxCucumis sativus68.3921.5483.49212forward

Expression of CNT30708652

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MPRSKVTAGLTWPPEMLAPTETATKRAKAWAMEAEMRPAGVAAPLSVSLL*

Sequence

>CNT30708652
TAATAACGGTCTTACGGAGGCAGTGACGAAGGCGAGGAGGAGGGAGGCCACGATGGAGCCGAGGAGCTGGGCGATGACGTAGACGATGCCGCGGAGTAAG
GTGACGGCGGGGTTGACGTGGCCGCCGGAGATGTTGGCGCCGACGGAGACGGCGACGAAGAGGGCGAAAGCATGGGCGATGGAAGCGGAGATGAGGCCGG
CGGGAGTGGCGGCGCCGTTGTCGGTGAGCTTGTTGTAGGCGATGCCGGAACCTGAACCGGCGAACACGAAGATCAAGGTGGAGATGAACTCAGCCAACCC
CGCCTTCAAC