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Detailed information on CNT30310654


BLAST search results

BLAST vs Swiss-Prot:
sp|P25818|TIP11_ARATH, E-value = 4e-77

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30547910Camelina sativaIpomoea triloba30.5318.7285120forward
CNT30374311Camelina sativaArabidopsis thaliana90.0874.2192.09354forward
CNT30618329Camelina sativaSesamum indicum58.5218.6579.13230forward
CNT30727223Camelina sativaCorchorus capsularis56.7415.8981.17223forward
CNT30524746Camelina sativaPhaseolus vulgaris67.4329.3180.38265forward
CNT30708635Camelina sativaGlycine max60.814281.17239forward
CNT3084637Camelina sativaVigna radiata67.4323.0278.49265forward
CNT30542059Camelina sativaBrassica napus53.4426.3285.71210forward
CNT30239005Camelina sativaBrassica oleracea53.4421.0285.71210forward
CNT30612524Camelina sativaArabis alpina45.2969.5386.52178forward
CNT3066802Camelina sativaLeersia perrieri15.0124.8989.8359forward
CNT30623609Camelina sativaDaucus carota60.0541.9980.08236forward
CNT30619934Camelina sativaCajanus cajan34.3526.2682.22135forward
CNT30570838Camelina sativaVitis vinifera53.9450.3678.77212forward
CNT3057351Camelina sativaAmborella trichopoda45.0420.880.79177forward
CNT30113856Camelina sativaFicus carica35.1113.7583.33138forward
CNT30114821Camelina sativaEutrema salsugineum40.4615.2286.79159forward

Expression of CNT30310654

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MEAPENAPPAKMLAPTMKPIAIGAIVPRLPFLGSMAVA*

>peptide 2 (67 aa)
DKITQERKREMNSVVGGWELLVGGVDEENLVDESGPVDPVVGPGPAHHRWSKSHGGIHGGSGECSSS*

Sequence

>CNT30310654
CGGATAAAATTACACAAGAGAGAAAAAGAGAGATGAATTCAGTAGTCGGTGGTTGGGAGCTGCTCGTGGGTGGTGTTGATGAAGAAAACCTCGTAGATGA
GTCCGGCCCAGTAGACCCAGTGGTTGGTCCAGGTCCAGCTCACCACCGCTGGTCCAAAAGCCACGGCGGGATTCATGGAGGCTCCGGAGAATGCTCCTCC
AGCTAAGATGTTGGCTCCAACTATGAAACCAATTGCGATTGGAGCGATTGTTCCAAGACTCCCGTTTTTGGGGTCAATGGCGGTGGCGTAGACGGTGTAA
ACAAGCCCGAACGTCATCACGATCTCAAAAACGAAAGCGTTCAACACTCCTACTCCGGCAGAGAGTCCAAAAGCCGGCACAGCCTTGAAATTT