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Detailed information on CNT30176366


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FY14|TIP1_MEDTR, E-value = 3e-59

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677491Vigna angularisSetaria viridis14.6120.2388.5770forward
CNT30549654Vigna angularisIpomoea triloba26.7235.5689.84128forward
CNT30514098Vigna angularisJuglans regia56.3768.1879.63270forward
CNT30375776Vigna angularisArabidopsis thaliana35.4928.4881.18170forward
CNT30618415Vigna angularisSesamum indicum43.4233.3380.77208forward
CNT30727222Vigna angularisCorchorus capsularis61.855.9579.73296forward
CNT30381982Vigna angularisManihot esculenta23.822.9484.21114forward
CNT30524765Vigna angularisPhaseolus vulgaris72.4443.2794.24347forward
CNT30628528Vigna angularisVigna unguiculata82.0544.3198.73393forward
CNT30712649Vigna angularisGlycine max43.0128.6594.17206forward
CNT3042438Vigna angularisPrunus dulcis21.0912.2787.13101forward
CNT3096857Vigna angularisSolanum tuberosum14.4124.7386.9669forward
CNT30568703Vigna angularisActinidia chinensis54.0715.6380.69259forward
CNT30592382Vigna angularisMusa acuminata20.4616.4785.7198forward
CNT3084498Vigna angularisVigna radiata94.5741.8798.23453forward
CNT30542059Vigna angularisBrassica napus42.3825.4479.31203forward
CNT30146630Vigna angularisMedicago truncatula42.1745.9183.17202forward
CNT30247019Vigna angularisAvena sativa25.6810.0185.37123forward
CNT30662885Vigna angularisTriticum dicoccoides12.1125.4489.6658forward
CNT3075983Vigna angularisBrassica juncea42.3828.9682.27203forward
CNT30136463Vigna angularisLolium perenne23.5915.4284.07113forward
CNT30620034Vigna angularisCajanus cajan63.0528.7389.4302forward
CNT30154895Vigna angularisPrunus persica21.0913.3888.12101forward
CNT30706772Vigna angularisPrunus avium23.5932.1988.5113forward
CNT30322744Vigna angularisAsparagus officinalis14.6120.7191.4370forward
CNT30579360Vigna angularisEchinochloa crusgalli21.9217.387.62105forward
CNT30113763Vigna angularisFicus carica6226.8384.85297forward
CNT3050751Vigna angularisCucumis sativus6230.1880.13297forward

Expression of CNT30176366

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MLAPTETATKRPNAWAMEAEMSPAGVAAPLSVSLL*

Sequence

>CNT30176366
CTCGTATCAGTTCATCAAACACTTCGACTTAAAAGTTAGTTATGTAAAGTAAATAACGGTAATAACGGTCTTACGGAGGAGGTCACGAAGGCCAGGAGGA
GGGAGGTGATGTTGCCTCCGACGAAGGCGCCGAAGGTGACGGCGGGGTTCACGTGACCTCCGGAGATGTTAGCGCCGACGGAGACGGCGACAAAAAGGCC
GAATGCGTGGGCGATGGAGGCGGAGATGAGTCCGGCAGGTGTGGCGGCGCCGTTGTCAGTGAGCTTGTTGTAGGCGATGCCGGAGCCTGAGCCGGCGAAC
ACGAAGATGAGGGTGGAGATGAACTCGGCCAAAGCCGCCTTCAACGTGTCGGGGTGAGTGGCCTCCTCGGGCCTTCCGATGGCGATGTTTCTGATCGGCA
TCTTCAATCGACGGTGGTGATGATTACGACTGGTGAAAGATGAAGTGAACACCGAGATCACTCACTCAAATCACTCTCT