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Detailed information on CNT3066802


BLAST search results

BLAST vs Swiss-Prot:
sp|Q94CS9|TIP12_ORYSJ, E-value = 3e-41

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30689996Leersia perrieriOryza sativa21.114.979650forward
CNT30673906Leersia perrieriSetaria viridis60.3422.6690.21143forward
CNT30521445Leersia perrieriSetaria italica60.7615.8190.28144forward
CNT30641375Leersia perrieriNymphaea colorata28.6917.1389.7168forward
CNT30547910Leersia perrieriIpomoea triloba52.3219.3481.45124forward
CNT30373597Leersia perrieriArabidopsis thaliana28.2710.7786.5767forward
CNT30618329Leersia perrieriSesamum indicum61.611.8487.67146forward
CNT30382128Leersia perrieriManihot esculenta26.1615.987.162forward
CNT30524746Leersia perrieriPhaseolus vulgaris25.746.7586.8961forward
CNT30712649Leersia perrieriGlycine max50.2116.5582.35119forward
CNT30296934Leersia perrieriTriticum aestivum2711.992.1964forward
CNT30223457Leersia perrieriHordeum vulgare60.7648.3290.28144forward
CNT30397893Leersia perrieriTriticum turgidum60.7622.6188.19144forward
CNT30568703Leersia perrieriActinidia chinensis27.433.9286.1565forward
CNT30589165Leersia perrieriMusa acuminata58.2330.1385.51138forward
CNT30542059Leersia perrieriBrassica napus69.220.5584.76164forward
CNT30239005Leersia perrieriBrassica oleracea69.216.4284.76164forward
CNT30553179Leersia perrieriOryza glaberrima60.7620.8193.06144forward
CNT30443527Leersia perrieriAegilops tauschii47.2620.4491.96112forward
CNT30256642Leersia perrieriAvena sativa86.539.8186.34205forward
CNT30660459Leersia perrieriTriticum dicoccoides23.218.590.9155forward
CNT30310654Leersia perrieriCamelina sativa24.8915.0189.8359forward
CNT30612709Leersia perrieriArabis alpina56.5412.5982.84134forward
CNT30136463Leersia perrieriLolium perenne58.6518.9693.53139forward
CNT301194Leersia perrieriZea mays44.321.0487.62105forward
CNT30229576Leersia perrieriAnanas comosus58.2319.3891.3138forward
CNT30623609Leersia perrieriDaucus carota69.229.1884.76164forward
CNT30721484Leersia perrieriTriticum spelta278.7692.1964forward
CNT30364799Leersia perrieriSorghum bicolor67.0920.8988.68159forward
CNT30619906Leersia perrieriCajanus cajan23.212590.9155forward
CNT30596416Leersia perrieriOryza meridionalis49.3725.7789.74117forward
CNT30369235Leersia perrieriOryza glumipatula75.9515.9693.89180forward
CNT3057351Leersia perrieriAmborella trichopoda73.4220.4584.48174forward
CNT30331344Leersia perrieriDioscorea rotundata21.17.369250forward
CNT30101968Leersia perrieriOryza rufipogon60.7618.9588.19144forward
CNT30576681Leersia perrieriOryza barthii49.3720.1490.6117forward
CNT30579791Leersia perrieriEchinochloa crusgalli44.38.3392.38105forward
CNT30334322Leersia perrieriCynara cardunculus36.2918.5384.8886forward
CNT30114821Leersia perrieriEutrema salsugineum57.3813.0186.03136forward

Expression of CNT3066802

Peptides detected in this lncRNA

>peptide 1 (78 aa)
VHGGAVEGAAGEDVGADDEADGDGRDDAEVALLGVDGGGVDGVDEAEGHDDLEDDGVPGAEGHRRVHVPARDVGSHRHR

>peptide 2 (39 aa)
FMEAPSKAPPARMLAPTMKPMAMGAMMPRSPFLGSMAVA*

>peptide 3 (29 aa)
MTISKTTAFQAPKVTAGFTCPPEMLAPTAT

Sequence

>CNT3066802
GTTCATGGAGGCGCCGTCGAAGGCGCCGCCGGCGAGGATGTTGGCGCCGACGATGAAGCCGATGGCGATGGGCGCGATGATGCCGAGGTCGCCCTTCTTG
GGGTCGATGGCGGTGGCGTAGACGGTGTAGACGAGGCCGAAGGTCATGACGATCTCGAAGACGACGGCGTTCCAGGCGCCGAAGGTCACCGCCGGGTTCA
CGTGCCCGCCCGAGATGTTGGCTCCCACCGCCACCGC