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Detailed information on CNT30382128


BLAST search results

BLAST vs Swiss-Prot:
sp|P50156|TIP11_ORYSJ, E-value = 1e-53

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30549654Manihot esculentaIpomoea triloba20.5122.2286.2580forward
CNT30698180Manihot esculentaQuercus lobata27.6931.4985.19108forward
CNT30373960Manihot esculentaArabidopsis thaliana25.381987.8899forward
CNT30618415Manihot esculentaSesamum indicum20.7712.9888.8981forward
CNT30727224Manihot esculentaCorchorus capsularis22.3114.1987.3687forward
CNT30712649Manihot esculentaGlycine max24.3613.2185.2695forward
CNT3042438Manihot esculentaPrunus dulcis31.2814.8281.97122forward
CNT3096857Manihot esculentaSolanum tuberosum25.1335.1383.6798forward
CNT30542059Manihot esculentaBrassica napus26.6713.0387.5104forward
CNT30239005Manihot esculentaBrassica oleracea26.4110.3187.38103forward
CNT30146554Manihot esculentaMedicago truncatula45.948.2584.36179forward
CNT30310223Manihot esculentaCamelina sativa33.592090.08131forward
CNT3061912Manihot esculentaArabidopsis lyrata16.4120.0687.564forward
CNT3066802Manihot esculentaLeersia perrieri15.926.1687.162forward
CNT30619934Manihot esculentaCajanus cajan24.3618.4885.2695forward
CNT30420453Manihot esculentaPapaver somniferum34.3615.0188.81134forward
CNT30706772Manihot esculentaPrunus avium28.2131.3481.82110forward
CNT3031788Manihot esculentaTheobroma cacao20.7711.3188.8981forward
CNT3057335Manihot esculentaAmborella trichopoda33.5937.6483.21131forward
CNT30113856Manihot esculentaFicus carica22.828.8686.5289forward
CNT3050751Manihot esculentaCucumis sativus36.4114.4385.92142forward

Expression of CNT30382128

Peptides detected in this lncRNA

>peptide 1 (37 aa)
LLWINGCGVDCVHKPEGHHDLQNEGVPYTNSRRKSKS*

>peptide 2 (41 aa)
SLDQRLWRRLCTQARRSSRSPKRRRSIHQLQKKEQKLRCDG*

>peptide 3 (71 aa)
MFPPTKAPKVTAGLTWPPEMLAPTETATNRAKAWARDAATRPAGVFAALSVSLLKAIPEPSPAKTKIRVEMN

Sequence

>CNT30382128
CTTCTTTGGATCAACGGCTGTGGCGTAGACTGTGTACACAAGCCCGAAGGTCATCACGATCTCCAAAACGAAGGCGTTCCATACACCAACTCCAGAAGAA
AGAGCAAAAGCTGAGGTGCGACGGTTGATCCGAGGAGCTGAGCGATCCAGTAGAGGATACCACGAAGGAGAGTGATGTTCCCACCAACAAAAGCACCGAA
AGTAACAGCAGGGTTGACATGGCCACCGGAGATGTTGGCGCCAACCGAGACAGCAACAAATAGAGCAAAAGCGTGGGCGAGGGATGCAGCAACAAGACCG
GCAGGGGTGTTTGCAGCGTTGTCGGTTAGCTTGCTAAAGGCCATACCAGAACCTTCTCCGGCGAAAACGAAAATAAGAGTGGAGATGAAC