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Detailed information on CNT30239005


BLAST search results

BLAST vs Swiss-Prot:
sp|Q41963|TIP12_ARATH, E-value = 9e-112

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30549654Brassica oleraceaIpomoea triloba13.3136.9480.45133forward
CNT30698180Brassica oleraceaQuercus lobata11.2132.6584.82112forward
CNT30375250Brassica oleraceaArabidopsis thaliana24.2258.688.84242forward
CNT30382128Brassica oleraceaManihot esculenta10.3126.4187.38103forward
CNT30524746Brassica oleraceaPhaseolus vulgaris24.3226.8881.48243forward
CNT30628532Brassica oleraceaVigna unguiculata8.9121.9883.1589forward
CNT30712559Brassica oleraceaGlycine max11.9120.884.03119forward
CNT30223457Brassica oleraceaHordeum vulgare11.0136.9184.55110forward
CNT30393023Brassica oleraceaTriticum turgidum11.2125.6383.93112forward
CNT3084637Brassica oleraceaVigna radiata26.4322.9479.92264forward
CNT30542059Brassica oleraceaBrassica napus52.1565.29100521forward
CNT30552975Brassica oleraceaOryza glaberrima15.3226.3883.01153forward
CNT30146554Brassica oleraceaMedicago truncatula7.8121.0288.4678forward
CNT30443527Brassica oleraceaAegilops tauschii11.0120.0784.55110forward
CNT30256642Brassica oleraceaAvena sativa11.0121.3682.73110forward
CNT30310654Brassica oleraceaCamelina sativa21.0253.4485.71210forward
CNT3075983Brassica oleraceaBrassica juncea17.0224.2596.47170forward
CNT30260230Brassica oleraceaBrassica rapa17.6261.7593.75176forward
CNT30612524Brassica oleraceaArabis alpina17.7269.1480.79177forward
CNT30135940Brassica oleraceaLolium perenne14.8127.8283.11148forward
CNT30229501Brassica oleraceaAnanas comosus12.2120.5485.25122forward
CNT3066802Brassica oleraceaLeersia perrieri16.4269.284.76164forward
CNT30623609Brassica oleraceaDaucus carota17.3230.7880.92173forward
CNT30365926Brassica oleraceaSorghum bicolor15.8223.6281.65158forward
CNT30619934Brassica oleraceaCajanus cajan11.9123.1582.35119forward
CNT30423736Brassica oleraceaPapaver somniferum17.3221.1582.08173forward
CNT30706772Brassica oleraceaPrunus avium10.3129.3483.5103forward
CNT3057351Brassica oleraceaAmborella trichopoda19.8223.2784.34198forward
CNT30579360Brassica oleraceaEchinochloa crusgalli13.3121.9181.95133forward
CNT30113801Brassica oleraceaFicus carica11.2127.1283.93112forward
CNT3050798Brassica oleraceaCucumis sativus9.8129.6185.7198forward
CNT30114821Brassica oleraceaEutrema salsugineum20.5219.6289.27205forward

Expression of CNT30239005

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MEAPLKAPPARMLAPTMKPMAMGAIVPRLPFLGSMAVA*

>peptide 2 (72 aa)
KIKVILLIRIIKFKKTRNKEENKSRSMHNSHSSKKPSRQLQQQTQIQHTSTDKDSSKKKIQRPHRNSITMRK*

Sequence

>CNT30239005
TCAAAATAAAAGTTATTCTCTTGATAAGGATTATAAAGTTTAAAAAAACAAGAAATAAAGAAGAAAATAAAAGTAGAAGCATGCATAATTCACATTCGTC
TAAAAAGCCTTCAAGGCAACTCCAACAACAAACCCAAATACAACATACATCAACGGACAAGGATTCATCTAAAAAGAAGATCCAACGGCCACATAGAAAT
TCAATTACGATGAGAAAATAAAAACAAATCATATCACAACATTTAATTTTGAACGTCTTCAGTAATCAGTGGTGGGCAATTGCTCGTGGCCGTTTTCGAT
GATGTAAACAAAGTCGTAGATGATTCCGGCGAGTCCACCACCGACAAGAGGACCAACCCAATAAATCCAGTGGTTACTCCATGACCAGCTCACGACGGCT
GGTCCGAAAGCGACGGCTGGGTTCATGGAGGCTCCGCTGAAAGCTCCACCAGCAAGGATGTTAGCTCCGACGATGAAACCAATGGCGATGGGTGCGATTG
TTCCTAGGCTACCGTTTTTGGGGTCGATGGCTGTGGCGTAGACGGTGTAGACGAGCCCGAAGGTCATCACGATCTCGAAGACGAGACCATTCAAGGTTCC
AACTCCTGCGGAGAGACCGAACGCTGGAACTGCCTAAAAATTTAATGTTTTCAAAAGCCACCGGTGGCGAACTGAAGGAGGAAGCAAGCGACGACTGAGC
CAAGAAGCTGAGCAATCCAGTAGAGGAGACCACGGAGGAGAGTGATGTTTCCACCCAGGAAGGCACCGAAGGTAACGGCAGGGTTAACGTGTCCACCGGA
GATGTTGGAGTGGTGGCTCCATTGTCAGTGAGCTTGTTGAAAGCAATTCCTGAGCCTGAGCCGGCGAAGACAAAGATCAAAGTCGAGATAAACTCAGCGA
GGGCCGCCCTAAGTGCGCTGGGGTGAGTCACTTCTTCTTGGACTCCGCCGATGGCGATGTTTCTGGTCGGCATGATGGGAGAGAATAAATTGATTCGAG