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Detailed information on CNT30443527


BLAST search results

BLAST vs Swiss-Prot:
sp|Q5Z6F0|TIP22_ORYSJ, E-value = 8e-69

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673906Aegilops tauschiiSetaria viridis55.4748.1892.43304forward
CNT30521445Aegilops tauschiiSetaria italica80.6648.5292.08442forward
CNT30223457Aegilops tauschiiHordeum vulgare26.8249.3391.16147forward
CNT30397893Aegilops tauschiiTriticum turgidum36.6831.5598.01201forward
CNT30589165Aegilops tauschiiMusa acuminata37.7745.288.41207forward
CNT30542059Aegilops tauschiiBrassica napus20.0713.7884.55110forward
CNT30239005Aegilops tauschiiBrassica oleracea20.0711.0184.55110forward
CNT30254829Aegilops tauschiiAvena sativa74.4557.5594.61408forward
CNT30229576Aegilops tauschiiAnanas comosus26.6420.5186.99146forward
CNT3066802Aegilops tauschiiLeersia perrieri20.4447.2691.96112forward
CNT30364799Aegilops tauschiiSorghum bicolor29.0120.8992.45159forward
CNT30369235Aegilops tauschiiOryza glumipatula31.0215.0786.47170forward
CNT30644098Aegilops tauschiiCannabis sativa26.8252.582.31147forward
CNT3057351Aegilops tauschiiAmborella trichopoda31.0219.9879.41170forward
CNT30101968Aegilops tauschiiOryza rufipogon71.7251.7191.86393forward
CNT30114821Aegilops tauschiiEutrema salsugineum20.4410.7283.93112forward

Expression of CNT30443527

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MLAPMATATNSPNPWQIATAISPDGSSGAPPLTLAAIF

>peptide 2 (59 aa)
MLVKSPLATAGPKERAGFMDPPEKGPATRMLAPTMKPMAMGAMVPRDPFLGSAAVAYTV*

>peptide 3 (41 aa)
MAAGDVGADGDRDEQPKPVANRHGDQPGWVKRRAAAHLGCNF

>peptide 4 (49 aa)
CSSHHRDIRETAHHVRTFYVAEGIMDRTTLPMAGLVVVAGDGAVVVAHV*

>peptide 5 (34 aa)
VLHIIETFVRLPTTYALFMLPKALWTERLFPWLA*

Sequence

>CNT30443527
ATGTTCTTCACATCATCGAGACATTCGTGAGACTGCCCACCACGTACGCACTTTTTATGTTGCCGAAGGCATTATGGACCGAACGACTCTTCCCATGGCT
GGCTTAGTAGTCGTTGCCGGCGACGGGGCTGTGGTCGTCGCACATGTATAGGTATCGGTAGACGACGCCGGCGAGGCCACCGCCGATGAGCGGGCCGGCC
CAGTAGACCCAGATGTTGGTGAAGTCGCCGCTGGCAACGGCGGGGCCGAAGGAGCGTGCAGGGTTCATGGACCCGCCGGAGAAGGGGCCGGCCACGAGGA
TGTTGGCGCCGACGATGAAGCCGATGGCGATGGGGGCGATGGTGCCGAGGGATCCCTTCTTGGGGTCGGCGGCGGTGGCGTACACGGTGTAGACGAGCCC
GAAGGTGACGGCAGGGTTCACATGGCCGCCGGAGATGTTGGCGCCGATGGCGACCGCGACGAACAGCCCAAACCCGTGGCAAATCGCCACGGCGATCAGC
CCGGATGGGTCAAGCGGCGCGCCGCCGCTCACCTTGGCTGCAATTTTT