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Detailed information on CNT30552975


BLAST search results

BLAST vs Swiss-Prot:
sp|P50156|TIP11_ORYSJ, E-value = 4e-68

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678075Oryza glaberrimaSetaria viridis23.9727.195.68139forward
CNT30549654Oryza glaberrimaIpomoea triloba24.834086.11144forward
CNT30698180Oryza glaberrimaQuercus lobata23.2839.3680.74135forward
CNT30727221Oryza glaberrimaCorchorus capsularis15.6920.2284.6291forward
CNT30524797Oryza glaberrimaPhaseolus vulgaris21.2117.6586.99123forward
CNT30628402Oryza glaberrimaVigna unguiculata21.2114.5787.8123forward
CNT30708714Oryza glaberrimaGlycine max24.8332.2988.19144forward
CNT3042438Oryza glaberrimaPrunus dulcis20.5214.4689.08119forward
CNT30223457Oryza glaberrimaHordeum vulgare51.3810091.61298forward
CNT30392788Oryza glaberrimaTriticum turgidum25.5211.3795.27148forward
CNT30592382Oryza glaberrimaMusa acuminata29.3128.5791.18170forward
CNT30542059Oryza glaberrimaBrassica napus26.3819.1783.01153forward
CNT30239005Oryza glaberrimaBrassica oleracea26.3815.3283.01153forward
CNT30247019Oryza glaberrimaAvena sativa29.3113.8390170forward
CNT30135940Oryza glaberrimaLolium perenne3032.7191.95174forward
CNT30623609Oryza glaberrimaDaucus carota24.1424.9180.71140forward
CNT30620034Oryza glaberrimaCajanus cajan22.5912.4687.79131forward
CNT30154895Oryza glaberrimaPrunus persica21.2116.2986.99123forward
CNT30706772Oryza glaberrimaPrunus avium18.4530.4890.65107forward
CNT3057351Oryza glaberrimaAmborella trichopoda26.7218.2183.23155forward
CNT30575580Oryza glaberrimaOryza barthii36.3862.99100211forward
CNT30579360Oryza glaberrimaEchinochloa crusgalli30.5229.1697.74177forward
CNT30113801Oryza glaberrimaFicus carica27.5938.7488.75160forward
CNT3050792Oryza glaberrimaCucumis sativus23.7913.8380.43138forward

Expression of CNT30552975

Peptides detected in this lncRNA

>peptide 1 (89 aa)
MRETKRLDRSRRRGDHGQAAAAAMSLVVGGGELLVGVGDEEDLETAGFMEAPSNAPPTRMFAPTMKPMAMGAMVPRLPFLGSTAVAYTV*

>peptide 2 (40 aa)
TQANACTVLQKQSNGFPKVHTYSTFNVQLIQANETGLMMH*

>peptide 3 (32 aa)
SGKCMHSFTEAKQRVPKGPHLQYVQRTTDPSK*

Sequence

>CNT30552975
ACTCAGGCAAATGCATGCACAGTTTTACAGAAGCAAAGCAACGGGTTCCCAAAGGTCCACACTTACAGTACGTTCAACGTACAACTGATCCAAGCAAATG
AAACAGGTTTGATGATGCACTGATGCGAGAAACTAAACGGTTGGATCGGAGTCGGAGACGAGGCGATCATGGACAAGCGGCGGCGGCGGCGATGAGCTTA
GTAGTCGGTGGTGGGGAGCTGCTCGTGGGTGTGGGAGATGAAGAGGACCTCGAGACGGCCGGGTTCATGGAGGCGCCGTCGAACGCGCCGCCGACGAGGA
TGTTCGCGCCGACGATGAAGCCGATGGCGATGGGGGCGATGGTGCCGAGGCTGCCCTTCTTGGGGTCAACGGCGGTGGCGTACACGGTGTAGACGAGGCC
GAAGGTGCCGGTGGCGAGCCCGCCGGTGGAGAAGCGGAGGAGGAAGCACGCCACGGTGGAGCCCAGGAGCTGGGCGATCCAGTAGAGGAGGCCGCGGAAC
AGGGTGATGTTGCCGCCGACGAAGGCGCCGAAGGTCACGGCCGGGTTCACGTGGCCGCCGGAGATGTTGGCGCCGACGGA