Detailed information on CNT30375776


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30727222Arabidopsis thalianaCorchorus capsularis28.3131.9584.02169forward
CNT30708652Arabidopsis thalianaGlycine max31.9961.6181.68191forward
CNT30542059Arabidopsis thalianaBrassica napus46.7334.9692.11279forward
CNT3075983Arabidopsis thalianaBrassica juncea46.0639.2390.55275forward
CNT30176366Arabidopsis thalianaVigna angularis28.4835.4981.18170forward

Expression of CNT30375776

Peptides detected in this lncRNA

>peptide 1 (39 aa)
FHNSHSLVFSIIVIKPYNTIAQKPSRDITTPTTNPKTHK*

>peptide 2 (51 aa)
MQIKKANHEKFIRLTTLNLTSSVIGGNGRVNVATGNVSANRDSDKETESMS*

Sequence

>CNT30375776
TTTTCATAATTCACATTCCCTGGTTTTCTCAATTATAGTTATTAAACCGTACAATACAATTGCACAAAAGCCTTCCAGAGATATTACAACTCCAACAACA
AACCCAAAGACACATAAATGATCAATCAATAGACAAAGATTCATCTAAAAATGATCCAACGGCCAGAAACCCATTACGATGCAAATTAAAAAAGCAAATC
ACGAAAAATTCATCAGATTAACAACGTTGAATTTGACGTCTTCAGTAATCGGTGGTAACGGCAGGGTTAACGTGGCCACCGGAAATGTTAGCGCCAACAG
AGACAGCGACAAAGAGACCGAAAGCATGAGCTAAGGCAGCGGCGACGAGGCCGGAAGGAGTGGTTGCTCCATTGTCAGTGATCTTGTTGAAAGCAATTCC
GGAGCCTGAGCCGGCGAAGACGAAGATCAAAGTCGAGATAAACTCAGCGAGCGCCGCCCTAAGTGCGTTGGGGTGATAGACCTCTTCTTGGACTCCACCA
ATGGCGATGTTTCTGGTCGGCATGATCGGAGAAAGATTTAACGGCTGAGGTTAAAAGCTTTTTGATTAGAGAGAGTGAAGTGATTGGTTTGTTTTTC