Detailed information on CNT3050798


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FY14|TIP1_MEDTR, E-value = 6e-51

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30514098Cucumis sativusJuglans regia22.9619.1989.4776forward
CNT30698180Cucumis sativusQuercus lobata32.3331.285.98107forward
CNT30727224Cucumis sativusCorchorus capsularis21.1511.4287.1470forward
CNT30592382Cucumis sativusMusa acuminata28.715.9783.1695forward
CNT30542059Cucumis sativusBrassica napus29.6112.2885.7198forward
CNT30239005Cucumis sativusBrassica oleracea29.619.8185.7198forward
CNT3075983Cucumis sativusBrassica juncea20.549.786.7668forward
CNT30420453Cucumis sativusPapaver somniferum30.5111.3190.1101forward
CNT30706772Cucumis sativusPrunus avium27.7926.2182.6192forward
CNT30331344Cucumis sativusDioscorea rotundata22.9611.1984.2176forward
CNT30579360Cucumis sativusEchinochloa crusgalli20.5411.285.2968forward

Expression of CNT3050798

Peptides detected in this lncRNA

>peptide 1 (73 aa)
MIPRRRVMLPPTKAPKVTAGLTWPPEMLAEMRPAGVAAPSLVSLLKAMPEPWPAKTKIKVEINSANPAFKASG*

>peptide 2 (68 aa)
MATGDVSGDETSWSGSAVIGELIKGYAGTLASKNKNQGGDKLSQSSLQSIWMSSLFGPSNCNVTDRHG*

Sequence

>CNT3050798
TGAGCAATCCAGTAGATGATACCACGTAGAAGGGTGATGTTACCGCCAACGAAGGCACCAAAGGTAACAGCGGGGTTAACATGGCCACCGGAGATGTTAG
CGGAGATGAGACCAGCTGGAGTGGCAGCGCCGTCATTGGTGAGCTTATTAAAGGCTATGCCGGAACCTTGGCCAGCAAAAACAAAAATCAAGGTGGAGAT
AAACTCAGCCAATCCAGCCTTCAAAGCATCTGGATGAGTAGCCTCTTCGGGCCTTCCAATTGCAATGTTACGGATCGGCATGGCTAGTAATAATTAGAGA
ACTTTAAAATGAAAATTCTTTAGAATTAATT