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Detailed information on CNT30506884


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675831Nicotiana attenuataSetaria viridis31.3314.3696.1578forward
CNT30523531Nicotiana attenuataSetaria italica31.3311.3796.1578forward
CNT30318276Nicotiana attenuataCorylus avellana30.127.2797.3375forward
CNT30518318Nicotiana attenuataJuglans regia30.9212.298.777forward
CNT30500546Nicotiana attenuataCoffea canephora30.9216.6397.477forward
CNT30278460Nicotiana attenuataChenopodium quinoa32.1312.8698.7580forward
CNT3070099Nicotiana attenuataQuercus suber30.5213.6498.6876forward
CNT30401878Nicotiana attenuataBeta vulgaris32.1312.5496.2580forward
CNT30628611Nicotiana attenuataVigna unguiculata32.5316.5397.5381forward
CNT30494259Nicotiana attenuataOlea europaea29.7214.6898.6574forward
CNT30712442Nicotiana attenuataGlycine max30.524.5398.6876forward
CNT3043428Nicotiana attenuataPrunus dulcis30.9217.1998.777forward
CNT30163346Nicotiana attenuataPistacia vera30.1211.3310075forward
CNT30638745Nicotiana attenuataCapsicum annuum33.7316.596.4384forward
CNT3094527Nicotiana attenuataSolanum tuberosum36.9517.6298.9192forward
CNT30307634Nicotiana attenuataTriticum aestivum29.7211.5894.5974forward
CNT30227210Nicotiana attenuataHordeum vulgare31.3317.2993.5978forward
CNT30399552Nicotiana attenuataTriticum turgidum29.7211.6494.5974forward
CNT30561111Nicotiana attenuataActinidia chinensis31.7319.1394.9479forward
CNT3085655Nicotiana attenuataVigna radiata30.9216.0896.177forward
CNT30541757Nicotiana attenuataBrassica napus31.7312.8994.9479forward
CNT30233654Nicotiana attenuataBrassica oleracea32.9317.0595.1282forward
CNT30172276Nicotiana attenuataTrifolium pratense30.1215.598.6775forward
CNT30145007Nicotiana attenuataMedicago truncatula26.110.9498.4665forward
CNT30248711Nicotiana attenuataAvena sativa31.3313.8193.5978forward
CNT30260384Nicotiana attenuataBrassica rapa32.537.2793.8381forward
CNT30601041Nicotiana attenuataFraxinus excelsior29.7213.2697.374forward
CNT30468162Nicotiana attenuataSaccharum spontaneum29.7210.1195.9574forward
CNT30217757Nicotiana attenuataKalanchoe fedtschenkoi28.5117.7198.5971forward
CNT30213082Nicotiana attenuataHelianthus annuus32.1317.8296.2580forward
CNT30715353Nicotiana attenuataMalus domestica golden30.126.197.3375forward
CNT30722856Nicotiana attenuataTriticum spelta29.7217.4994.5974forward
CNT30348934Nicotiana attenuataEragrostis tef24.53.4596.7261reverse complement
CNT30596688Nicotiana attenuataOryza meridionalis31.3314.4797.4478forward
CNT30355299Nicotiana attenuataLactuca sativa32.1311.5196.2580forward
CNT30154619Nicotiana attenuataPrunus persica30.9218.9798.777forward
CNT30423745Nicotiana attenuataPapaver somniferum30.1215.6297.3375forward
CNT30704989Nicotiana attenuataPrunus avium30.529.9997.3776forward
CNT3032717Nicotiana attenuataTheobroma cacao28.518.1297.1871forward
CNT3024433Nicotiana attenuataPopulus trichocarpa30.5221.7198.6876forward
CNT30326905Nicotiana attenuataAsparagus officinalis30.5217.3193.4276forward
CNT30120214Nicotiana attenuataCitrus clementina30.5214.8197.3776forward
CNT3038456Nicotiana attenuataCucumis melo29.3214.694.5273forward
CNT30584684Nicotiana attenuataEchinochloa crusgalli31.3316.3296.1578forward
CNT30604511Nicotiana attenuataOryza punctata31.3314.9796.1578forward
CNT30174981Nicotiana attenuataVigna angularis30.9215.6598.777forward
CNT30112128Nicotiana attenuataFicus carica30.9214.0897.477forward
CNT30723374Nicotiana attenuataLupinus angustifolius30.128.499675forward
CNT3048749Nicotiana attenuataCucumis sativus29.3214.0794.5273forward
CNT30115398Nicotiana attenuataEutrema salsugineum30.5215.5194.7476forward

Expression of CNT30506884

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MRAKWKKKRMRRLKRKRRKMRQRSKKVFAV*

Sequence

>CNT30506884
TTCATTTAGTGCCGTATCCTCTTCATATCGACAGCTTCGCTCTGGTTAGGAAGTAAAGAGTAGTCCCTTAAGTCGTAGCTGATTCACCATGAGAGCCAAG
TGGAAGAAGAAGCGTATGAGGAGGTTGAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCTAAGAAAGTGTTTGCCGTTTAGTACCTGAAAACTTCCATCA
CCGATGCAAGATATGACACGTTTTTTAGGTACAGATTGCGCATAGCCCA