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Detailed information on CNT30115398


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30317675Eutrema salsugineumCorylus avellana12.6523.0595.1662forward
CNT30549577Eutrema salsugineumIpomoea triloba15.9221.7994.8778reverse complement
CNT30506884Eutrema salsugineumNicotiana attenuata15.5130.5294.7476forward
CNT30144286Eutrema salsugineumMedicago truncatula15.120.8594.5974reverse complement
CNT3061383Eutrema salsugineumArabidopsis lyrata29.1823.3790.21143forward
CNT30609975Eutrema salsugineumGossypium raimondii15.7120.3293.5177forward
CNT30620847Eutrema salsugineumCajanus cajan15.9221.7993.5978forward
CNT30429165Eutrema salsugineumPapaver somniferum16.1222.2593.6779forward
CNT30572709Eutrema salsugineumVitis vinifera16.7327.795.1282forward
CNT3024248Eutrema salsugineumPopulus trichocarpa15.9224.4592.3178forward
CNT30725207Eutrema salsugineumLupinus angustifolius16.1221.9493.6779forward

Expression of CNT30115398

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MSVDGPIRPIIKERANSKSLNVLLVSIHFL*

>peptide 2 (62 aa)
MYYWSRSISSRVSGIYISSCFVTHTKKSSIRFCEKEVMRAKWKKKRMRRLKRKRRKMRQRSK*

Sequence

>CNT30115398
CAGTACTGTGAGTGATGAGTGTAGATGGGCCTATTAGGCCCATAATAAAGGAACGGGCCAATAGTAAAAGCCTAAATGTATTATTGGTCTCGATCCATTT
CCTCTAGGGTTTCTGGAATATATATTTCATCTTGTTTTGTCACTCACACTAAGAAATCGTCGATTAGGTTTTGTGAAAAAGAAGTCATGAGAGCTAAGTG
GAAGAAGAAGCGTATGAGGAGGTTGAAGAGGAAGAGACGAAAGATGAGACAGAGATCTAAGTAGGCGCATCAAATCGACAAGTCTTTCGCTTTTCCCTCT
GCTTTGTGTTTCGTTTTTTCCTGGATTTCACCGGAATTAGATAACAATTCTGTCTTTTGTTTCAATTTTCAAGAGAATACATTTTTGTTGTTGTTGGATT
GAATCTATTTTCTATTAATGCGAGGCTTTATTGTCTTCATATTGCTCTCTTGCGTATTTACTAGTTGATTCACACTCTTTTATCGAATTA