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Detailed information on CNT30557734


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SBN6|PSBO_VOLCA, E-value = 4e-29

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30547255Panicum halliiIpomoea triloba18.6125.1985.5131forward
CNT30374900Panicum halliiArabidopsis thaliana36.6544.2581.78258forward
CNT30266704Panicum halliiChenopodium quinoa18.1822.8283.59128forward
CNT30524993Panicum halliiPhaseolus vulgaris34.9421.4583.33246forward
CNT30710612Panicum halliiGlycine max36.5124.981.71257forward
CNT3042430Panicum halliiPrunus dulcis36.5123.680.93257forward
CNT30567883Panicum halliiActinidia chinensis21.597.0580.92152forward
CNT3086209Panicum halliiVigna radiata36.3617.9879.69256forward
CNT30542247Panicum halliiBrassica napus18.6121.9884.73131forward
CNT30238377Panicum halliiBrassica oleracea35.5146.5580250forward
CNT30259787Panicum halliiBrassica rapa34.844.8780.41245forward
CNT30207216Panicum halliiHelianthus annuus16.6221.4782.05117forward
CNT30680665Panicum halliiTriticum urartu36.0823.3992.52254forward
CNT30342712Panicum halliiEragrostis tef41.4833.5694.18292forward
CNT30368483Panicum halliiSorghum bicolor38.6422.4493.01272forward
CNT30704492Panicum halliiPrunus avium33.6625.2480.59237forward
CNT30319324Panicum halliiAsparagus officinalis19.0342.0189.55134forward
CNT30584089Panicum halliiEchinochloa crusgalli38.7823.196.7273forward

Expression of CNT30557734

Peptides detected in this lncRNA

>peptide 1 (70 aa)
MSLVFWNSGGAFLAMPSALTVKDVGSRQNFFIWYLPALKGKESTPPSMVGHWFAVPVPFTSMYVLLWISS*

>peptide 2 (80 aa)
MREHKKEETHAKIKNQQPVFALIGTQCRLLCSQKFFHRTPCPWITVASSKIRAARTRSPGSSHPWAPWPRAGPRSHRGCR*

>peptide 3 (42 aa)
MGRIYVGRQTKAHIYTDTHIYTRQPSPLSSCPNAKQALHGSS*

Sequence

>CNT30557734
GGCTATTAAGTGGGCCTCCTGAAGAATGCAGCCCCCTATTTGTCTCTTAATTATTTCTGCAAGATGTAAAGAGACACAGCATGGGAAGAATATATGTAGG
GCGGCAAACTAAGGCACACATATACACTGATACACACATATATACTAGGCAGCCGTCCCCTCTCTCCTCTTGTCCAAATGCAAAGCAAGCATTACATGGG
AGTTCATGAGAGAACACAAGAAAGAAGAAACGCATGCTAAAATAAAAAATCAACAGCCAGTATTTGCATTAATAGGTACACAATGCCGCCTCCTTTGCTC
TCAAAAGTTTTTTCATCGTACACCTTGCCCATGGATCACGGTCGCGTCGTCTAAGATTCGAGCTGCGCGTACCAGATCCCCTGGATCTTCACATCCTTGG
GCGCCTTGGCCCCGAGCGGGCCCTCGATCTCATCGAGGGTGTAGGTGAGGCGGGTCATGAGCTTGGTCTTCTGGAACTCGGGCGGCGCGTTCTTGGCGAT
GCCCTCGGCCTTGACGGTGAAGGACGTCGGCTCCAGGCAGAACTTCTTCATCTGGTACTTGCCGGCCTTGAAGGGGAAGGAGTCGACGCCGCCGTCGATG
GTCGGGCACTGGTTCGCCGTGCCGGTCCCCTTCACCTCCATGTACGTCTTGCTCTGGATCTCGTCGTAGGTCAGCCTCTTGGGCGTGCCCTCCGCGCTCG
CGCC