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Detailed information on CNT30377797


BLAST search results

BLAST vs Swiss-Prot:
sp|P23321|PSBO1_ARATH, E-value = 5e-33

BLAST vs NONCODE:
NONBRAT003826, E-value = 5e-48

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30547255Arabidopsis thalianaIpomoea triloba49.4124.0481.6125forward
CNT30266710Arabidopsis thalianaChenopodium quinoa52.5715.5684.21133forward
CNT30727931Arabidopsis thalianaCorchorus capsularis51.7816.987.02131forward
CNT30379569Arabidopsis thalianaManihot esculenta51.7814.8784.73131forward
CNT30524993Arabidopsis thalianaPhaseolus vulgaris41.119.0786.54104forward
CNT30710612Arabidopsis thalianaGlycine max39.929.7984.16101forward
CNT30221336Arabidopsis thalianaHordeum vulgare22.138.191.0756forward
CNT30385696Arabidopsis thalianaTriticum turgidum22.1313.8392.8656forward
CNT3086209Arabidopsis thalianaVigna radiata25.694.5689.2365forward
CNT309111Arabidopsis thalianaZea mays28.469.8187.572forward
CNT30607754Arabidopsis thalianaGossypium raimondii41.1125.2486.54104forward
CNT30368337Arabidopsis thalianaSorghum bicolor28.4610.8387.572forward
CNT30356640Arabidopsis thalianaLactuca sativa31.2311.8687.3479forward
CNT30319324Arabidopsis thalianaAsparagus officinalis49.4139.1882.4125forward
CNT30725886Arabidopsis thalianaLupinus angustifolius43.484.8184.55110forward
CNT3050994Arabidopsis thalianaCucumis sativus32.4113.7486.5982forward

Expression of CNT30377797

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MSFVFWNSGGAFLLTLSALTVKEVGSKQNFFPAYFPGLNEKERWRSSPTGGM*

>peptide 2 (83 aa)
GSFDLVKGVGKTGHELCVLELWRSVLAYTVCLDGEGSRLEAELLSCILSGFERERAVAIFADWRNVAVDWREAAMATKSLLSFF

Sequence

>CNT30377797
AGGGTCCTTCGATCTCGTCAAGGGTGTAGGTAAGACGGGTCATGAGCTTTGTGTTCTGGAACTCTGGAGGAGCGTTCTTGCTTACACTGTCTGCCTTGAC
GGTGAAGGAAGTAGGCTCGAAGCAGAACTTCTTTCCTGCATACTTTCCGGGTTTGAACGAGAAAGAGCGGTGGCGATCTTCGCCGACTGGAGGAATGTAG
CGGTGGATTGGAGAGAGGCTGCCATGGCCACAAAGTCTCTCTTGAGTTTTTTT