Detailed information on CNT309111


BLAST search results

BLAST vs Swiss-Prot:
sp|P84989|PSBO_POPEU, E-value = 1e-25

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675069Zea maysSetaria viridis24.3960.2797.21179forward
CNT30547255Zea maysIpomoea triloba30.2542.6989.19222forward
CNT30515312Zea maysJuglans regia24.1111.3281.92177forward
CNT30377797Zea maysArabidopsis thaliana9.8128.4687.572forward
CNT30266710Zea maysChenopodium quinoa30.5226.282.14224forward
CNT30287195Zea maysTriticum aestivum38.0131.4991.4279forward
CNT30221336Zea maysHordeum vulgare33.2435.3190.98244forward
CNT30385696Zea maysTriticum turgidum32.2958.5293.25237forward
CNT3086209Zea maysVigna radiata24.9312.8580.87183forward
CNT30244470Zea maysAvena sativa39.5152.5491.38290forward
CNT30658047Zea maysTriticum dicoccoides47.1444.1390.46346forward
CNT30259875Zea maysBrassica rapa9.5425.5588.5770forward
CNT30597992Zea maysFraxinus excelsior13.2227.7985.5797forward
CNT30207216Zea maysHelianthus annuus22.3430.0981.71164forward
CNT30718209Zea maysMalus domestica golden29.0215.8283.57213forward
CNT30626592Zea maysDaucus carota25.22180185forward
CNT30680645Zea maysTriticum urartu38.0129.1591.04279forward
CNT30348024Zea maysEragrostis tef38.2845.5496.44281forward
CNT30368337Zea maysSorghum bicolor38.6942.7197.54284forward
CNT30355286Zea maysLactuca sativa29.2935.4280.93215forward
CNT30571093Zea maysVitis vinifera14.5825.682.24107forward
CNT30704492Zea maysPrunus avium25.219.780185forward
CNT30319471Zea maysAsparagus officinalis16.6240.9487.7122forward
CNT30584058Zea maysEchinochloa crusgalli39.122.6798.61287forward
CNT30724288Zea maysLupinus angustifolius24.5215.7181.67180forward

Expression of CNT309111

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MTSPVSGLLLVTLSVMLPVDEAAFLMSRGSWARGRARRSCPACRWRRAA*

>peptide 2 (30 aa)
TINLWCQTATLRVCTRESTGVHKKERRNPN*

>peptide 3 (42 aa)
MSLVFWNSGGAFLAMPSALTVRLALDLVVGQPLGRALRARALR

Sequence

>CNT309111
TAACAATTAATCTCTGGTGTCAAACAGCCACTCTTCGTGTTTGCACACGGGAGTCCACTGGAGTACACAAGAAAGAAAGAAGAAACCCAAACTGAAATTA
AAAACCAACAGCCCGAATTTGCATTAATAGTTACATACACGATTCCTCCTCCTCTCTCAAAAGTTCTCCATGACGGTCCGACGCCTCTAACAGTTAAAAC
GAATCACTCGAGCTGCGCGTACCAGACCCCCTGGATCTTGACATCCTTGGGCGCCTTAGCCCCGAGGTCGGTGTCCGACGGCTGCACGCTCTCGAATACG
CCAATGACCTCGCCGGTGTCCGGGTTGCTCTTGGTGACGCTCAGCGTGATGTTGCCCGTGGACGAGGCGGCGTTCTTGATGAGCCGCGGTAGCTGGGCAC
GAGGAAGGGCCCGCCGAAGCTGTCCGGCTTGCCGGTGGCGACGAGCTGCTTGACGGTGAAGAGGAAGGGCACGCGCTCGCCGCCCGGGAGCTGCACGGTG
ACGGCGGCGTAGTCGATGCCGTCCTTCTCCTCGAACTTGAGGGTGCCGTCGGAGGCGACCTCGAGCGGGCCCTCGATCTCGTCCAGCGTGTAGGTGAGGC
GGGTCATGAGCTTGGTCTTCTGGAACTCGGGCGGCGCGTTCTTGGCGATGCCCTCCGCCTTGACGGTACGTCTTGCTCTGGATCTCGTCGTAGGTCAGCC
TCTTGGGCGTGCCCTCCGCGCTCGCGCCCTGCGC