Detailed information on CNT30612678


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30277684Arabis alpinaChenopodium quinoa32.18.7187.1878forward
CNT30711854Arabis alpinaGlycine max27.989.2185.2968forward
CNT30122105Arabis alpinaPhyscomitrium patens23.0516.2387.556forward
CNT30221336Arabis alpinaHordeum vulgare24.698.6886.6760forward
CNT3086209Arabis alpinaVigna radiata27.984.7886.7668forward
CNT30147296Arabis alpinaMedicago truncatula28.412.0885.5169forward
CNT30597992Arabis alpinaFraxinus excelsior23.8716.6287.9358forward
CNT30319471Arabis alpinaAsparagus officinalis20.5816.789050forward
CNT3036059Arabis alpinaCucumis melo30.4512.0986.4974forward
CNT3050994Arabis alpinaCucumis sativus30.4512.486.4974forward

Expression of CNT30612678

Peptides detected in this lncRNA

>peptide 1 (33 aa)
NLKGSLDLVERVSETGHKLSVLEIRWRERNQRF*

Sequence

>CNT30612678
AACCTCAAAGGGTCCCTCGATCTCGTCGAGCGTGTAAGTGAGACGGGTCATAAGCTTAGTGTTTTGGAAATCCGGTGGCGAGAGCGAAACCAGCGATTTT
AGCGGCATCAGAGCATTTTCCGACGAAGTCTTTGAAGTCAGAGTGGAGAGAACAAGTGAGTCTAGCAGGTGAAGAGTCAAGACCAAAGGACTTTCCAACG
GTTTGGTTTGATCGGAGATGAACATTCCGAGAAGGAGAAGCGG