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Detailed information on CNT30436022


BLAST search results

BLAST vs Swiss-Prot:
sp|P84989|PSBO_POPEU, E-value = 6e-17

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675069Aegilops tauschiiSetaria viridis21.6872.0592.52214forward
CNT30317789Aegilops tauschiiCorylus avellana15.575.3782.35153forward
CNT30547255Aegilops tauschiiIpomoea triloba26.5550.3884.35262forward
CNT30374900Aegilops tauschiiArabidopsis thaliana26.4444.7780.46261forward
CNT30266710Aegilops tauschiiChenopodium quinoa25.9429.9480.86256forward
CNT30524993Aegilops tauschiiPhaseolus vulgaris37.4932.2679.73370forward
CNT30710612Aegilops tauschiiGlycine max37.0835.4778.96366forward
CNT3086209Aegilops tauschiiVigna radiata38.526.6977.63380forward
CNT30542247Aegilops tauschiiBrassica napus13.2721.9883.97131forward
CNT30238377Aegilops tauschiiBrassica oleracea25.7347.381.1254forward
CNT30259787Aegilops tauschiiBrassica rapa24.8244.8780.41245forward
CNT30207216Aegilops tauschiiHelianthus annuus16.0128.9980.38158forward
CNT30681068Aegilops tauschiiTriticum urartu65.3565.4298.6645forward
CNT30348024Aegilops tauschiiEragrostis tef31.7150.7391.69313forward
CNT30477612Aegilops tauschiiArabidopsis halleri17.5334.7479.77173forward
CNT30704492Aegilops tauschiiPrunus avium25.7327.0579.53254forward
CNT30584058Aegilops tauschiiEchinochloa crusgalli40.4331.5292.73399forward

Expression of CNT30436022

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MSDCREQVILAPASTPNARPPILAGISVAAAWRDAAMLVGGLVRGRID

>peptide 2 (62 aa)
MSLVFWKAGGSFFWMPSALTVKEVGSRQNFFISYLPALKGKESTPPSMVGHWFAVPVPFTSM*

Sequence

>CNT30436022
TTTGTGAACATTCATGGGGGATCAATATCATGAGTAGGCGAGGAAGAAACAATAACAGAAGCTAAAATATAAACCGACACCCTGGGTTTAGATTACTAGA
TACACACACAAACACACATTGTTGCCTCGATTGTTTCCTCTCCACCGATCAACCCACGTACGCATGCACACAAGATGAGTATCTTCACTTCTGCTCTGCT
CTAGTTAGACTCGAGCTGCGCGTACCACACACCCTGGATCTTGACATCCTTGGGCGCCTTGGCGCCGAGCTGCTTGACGGTGAAGAGGAAGGGCACGCGC
TCGCCTCCGGGGAGCTGCACGGTGACGGCCGCGTAGTCGATGCCGTCCTTCTCCTCGAACTTGAGGGTGCCGTCGGCGCCGACCTCGAGCGGGCCTTCCA
TCTCGTCAAGGGTGTAGGTGAGACGGGTCATGAGCTTGGTCTTCTGGAAGGCCGGCGGCTCGTTCTTCTGGATGCCCTCGGCCTTGACGGTGAAGGAGGT
GGGCTCCAGGCAGAACTTCTTCATCTCGTACTTGCCGGCCTTGAAGGGGAAGGAGTCGACGCCGCCGTCGATGGTCGGGCACTGGTTCGCGGTGCCGGTA
CCCTTCACCTCCATGTAGGTCTTGCTCTGGATCTCGTCGAAGGTCAGCCTCTTGGGCGCCCCCTCCGCGCTCGCGCCCTGCACCCACGCGCGTCACTCTA
GCTAGCTGGACTGGACAGGAGTAAAAGGCCATGGACGGGAATAGAATGGATTAGTCAGCTTACGGAGACGAGGAGGGCAGAGGTGGCGAGGGCGAAGCCG
GCCATCTTGGCGGCGTCGGCGCACTTGCTTGCGACCTCCCTGATGTCGGACTGCAGGGAGCAGGTGATCCTGGCGCCAGCGTCGACGCCGAACGCCCGGC
CGCCGATCTTGGCCGGCATCAGCGTGGCCGCGGCTTGGAGAGACGCTGCCATGTTGGTCGGTGGCTTGGTACGCGGGAGGATCGATC