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Detailed information on CNT30147114


BLAST search results

BLAST vs Swiss-Prot:
sp|P14226|PSBO_PEA, E-value = 3e-174

BLAST vs NONCODE:
NONGMAT000837, E-value = 4e-90

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30317789Medicago truncatulaCorylus avellana9.9386.779.55176forward
CNT30515361Medicago truncatulaJuglans regia20.9283.9482.21371forward
CNT30277684Medicago truncatulaChenopodium quinoa3773.2181.71656forward
CNT30379731Medicago truncatulaManihot esculenta40.564.6880.5718forward
CNT30525147Medicago truncatulaPhaseolus vulgaris24.8271.985.91440forward
CNT30196966Medicago truncatulaPisum sativum9.487085.71168forward
CNT3042430Medicago truncatulaPrunus dulcis20.733.780.38367forward
CNT30567885Medicago truncatulaActinidia chinensis39.7660.7280.57705forward
CNT3086209Medicago truncatulaVigna radiata27.8134.6283.16493forward
CNT30543261Medicago truncatulaBrassica napus16.8655.4778.6299forward
CNT30508746Medicago truncatulaSolanum lycopersicum27.8659.6680.77494forward
CNT30614251Medicago truncatulaArabis alpina6.4940.4984.35115forward
CNT30607994Medicago truncatulaGossypium raimondii16.0232.7283.1284forward
CNT30207216Medicago truncatulaHelianthus annuus8.9128.9981.01158forward
CNT30477612Medicago truncatulaArabidopsis halleri6.3222.4983.04112forward
CNT30704492Medicago truncatulaPrunus avium20.5938.8780.82365forward
CNT30319471Medicago truncatulaAsparagus officinalis3.8923.1585.5169forward
CNT30121175Medicago truncatulaCitrus clementina18.2270.8381.11323forward
CNT3036059Medicago truncatulaCucumis melo20.9260.6282.48371forward
CNT30724288Medicago truncatulaLupinus angustifolius35.1454.3685.39623forward
CNT3051042Medicago truncatulaCucumis sativus23.3575.9681.88414forward

Expression of CNT30147114

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MFCFEFRRMSASLVHLLHLLPEINLYSYS*

>peptide 2 (30 aa)
MMQHSCCFPFQVLLHLLFLQLAMQLHCHNR*

>peptide 3 (29 aa)
MNIIKPLYWLCNVMVKYDFSLYKMTIFQV*

>peptide 4 (33 aa)
MKKKNRETKQHTETTRAEVARANPAILEASTNL*

>peptide 5 (66 aa)
MSLVFWNASGVFLVTPSALTVNEVGSRQNFLALYFPGLKENESTPPSMVGHWFAVPVPLTSKYVLL*

Sequence

>CNT30147114
TAGCAAGGGGGTTATTCTCAGCTCTTGAAAGTTGTTGAGTCAAAGGATAAAGCATCAACACTCTTGAAGTTTACAACAGAATAAAGCATGAGAAAGAAGC
TAGCTATAGCTATCTATGACTCAAGCTGAGCATACCAAACACCTTGGATTTTAACATCCTTTGGTGCTTTAGCACCCAAATCAGTGTCAGACGGCTGAAT
ACTCTCAAACACACCAATAACTTCACCAGTCTCAGGCTTAGTTTGAGTAACACTCAATGTGATTTTCCCCTTAGATGATGCAGCACTCTTGTTGTTTTCC
TTTCCAAGTTCTTCTTCATCTCCTCTTCCTCCAGCTGGCAATGCAACTGCATTGTCATAACCGGTAGATGCACCTCTTCCCTTTGGGTCCAAGAAAGAGC
TTCCTCTGTATGATGGTACCAAATACTCACCACTGAAGCTCTCTGGCTTCCCTGATGCTACCAATTGTTTGATGGTGAAAAGGAATGGCACACGCTCACC
ACCGGGAAGCTGAACTGTGACTGCGGCGTAGTCAATGCCATCTTTCTCCTCAAATTTGACAGAGCCGTCTGATGAAACCTCAAAGGGTCCTTCAATCTCG
TCGAGGGTGTAGGTTAAACGTGTCATGAGTTTGGTGTTTTGGAATGCAAGTGGGGTGTTCTTGGTTACACCTTCTGCTTTAACTGTGAATGAAGTTGGTT
CGAGGCAGAATTTCTTGGCGTTGTATTTTCCTGGTTTGAAGGAGAATGAGTCTACTCCTCCATCAATGGTTGGACATTGGTTTGCTGTTCCGGTTCCTTT
GACTTCCAAATATGTTTTGCTTTGAATTTCGTCGAATGTCAGCCTCTTTGGTGCACCTTCTGCACTTGCTCCCTGAAATTAATTTATATTCTTATTCTTA
GTCATGTTATGTAGAATAAAAATCAGATATAATCGAACAATAAGTCTAACTAGTAAACACTTTGCAATTTAATTAGTATCCCATTCAAGTGGATTGGATC
ATTCCCTGCCCCTGCAATCAGAGGTCGGCTGATGGATCTCAACCTATGAAATCCAACAGCTGACCTGTGACTGCTGAAACATGAAAGGATCCAAGGTGAA
TTCAAGTTAGGTTTATATTTGGTTAAGTGAGACTGAGGTTGGTACTTGGGAATGAACATCATAAAACCCTTGTATTGGTTATGTAATGTGATGGTTAAAT
ATGATTTTAGTCTTTATAAAATGACGATCTTTCAAGTTTAGTCCTTGTTTTGCTTTATATTTGCTATTTCTTAGTCTCTAGGGGACTAAAATTGAATAAA
ACTTTTGTAGAAACTAAACTTGAAAGACCATGATATTAAAGGGACTAGAAACATATTTAACCTACTATTTCACAAGATAAAATTAAATTATTTGGGTGTC
TATGATATTCCATTGCAACTTGTTATTCTCTAACTGACCTCCTTAATCAAAATGATTTGTAACTACTTTAAACCAGTAGACCATTCATCACAACTAATCC
AATAACAACAACAACAACAACAATAAAAGTATAATTAACTATAAAATGAATGACAATAAATTATGCAGTATTCATGTAACACCTAATGTTTGATAATATC
AACTTAGCATGAAGAAAAAGAATAGAGAGACAAAGCAACATACAGAGACAACGAGAGCAGAGGTAGCAAGAGCAAATCCAGCAATCTTAGAAGCTTCAAC
AAACTTGTGAGTCAACTCCTTGAAATCAGACTGAAGTGAACAAGTAACCTTAGCTCCATATGAAAACCTGTTC