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Detailed information on CNT30379731


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40459|PSBO_TOBAC, E-value = 5e-158

BLAST vs NONCODE:
NONTCAT000011, E-value = 4e-123

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30317789Manihot esculentaCorylus avellana16.4990.1582.51183forward
CNT30546481Manihot esculentaIpomoea triloba16.3131.1582.32181forward
CNT30515361Manihot esculentaJuglans regia32.6181.984.81362forward
CNT30277684Manihot esculentaChenopodium quinoa48.259.7181.31535forward
CNT30524993Manihot esculentaPhaseolus vulgaris35.5934.4481.01395forward
CNT30196966Manihot esculentaPisum sativum5.6826.2588.8963forward
CNT30711968Manihot esculentaGlycine max39.4660.6683.33438forward
CNT3042430Manihot esculentaPrunus dulcis28.8329.3883.44320forward
CNT30567885Manihot esculentaActinidia chinensis64.3261.581.23714forward
CNT3086209Manihot esculentaVigna radiata40.1831.3281.84446forward
CNT30508746Manihot esculentaSolanum lycopersicum45.4160.8783.73504forward
CNT30147114Manihot esculentaMedicago truncatula64.6840.580.5718forward
CNT30607994Manihot esculentaGossypium raimondii28.8336.8781.88320forward
CNT30626592Manihot esculentaDaucus carota49.6462.5480.22551forward
CNT30621504Manihot esculentaCajanus cajan20.3614.3482.3226forward
CNT30356640Manihot esculentaLactuca sativa28.8348.0583.44320forward
CNT30704492Manihot esculentaPrunus avium33.3339.482.16370forward
CNT3036059Manihot esculentaCucumis melo34.562.5881.72383forward
CNT30724288Manihot esculentaLupinus angustifolius47.7546.2582.45530forward
CNT3051042Manihot esculentaCucumis sativus39.179.6381.11434forward

Expression of CNT30379731

Peptides detected in this lncRNA

>peptide 1 (66 aa)
MSLVFWNSGGAFLFTPSALTVNEVGSRQNFLALYLPGLKANLSTPLAIVGHWFAVPVPFTSRYVLL*

>peptide 2 (53 aa)
MLPIVFDHLNWVEESFSNTFNTLQNLIQEYKYTNSCKKKSSTTQAEHTKFPGS*

>peptide 3 (86 aa)
MSCFEFHHRSDCKEQVILALLGSNPKAFDTVWVDLSWRLLVLEGIPPALVGCRSVAAACGVAAIVSVSLLLLPLCLCLLCKWIPYE*

Sequence

>CNT30379731
TCTCCATTAATATATGCTTCCAATAGTATTTGATCATCTCAATTGGGTAGAGGAAAGTTTTAGCAACACCTTCAACACTTTGCAAAATCTGATCCAAGAA
TATAAATACACAAATTCATGCAAGAAAAAGAGCTCTACGACTCAAGCTGAGCATACCAAATTCCCTGGATCTTGACCTCCTTTGGAGTCTTTGCTCCCAA
ATCAGTATCAGATGGCTGATAGCTTTCAAACACTCCAATAACTTCTCCAGTGTCAGGATTGCTTCCAGTGACACTAAGTGTAATTTTCCCCGTTGATGAT
GAAACATTCTTATTATTCTCTTTAGCTAGCTCTTCCTCGTCTCCTCTACCTCCTGCAGGCAAGGCAACTGCATTATCATAACCTGTGGAGCCACCTCTGC
CTTTTGGGTCCAAGAAAGATGAACCTCGGTAGGATGGTACAAGAAACTCTCCGCTAAAGCTCTCTGGTTTCCCAGTTGCCACCAACTGTTTGATGGTGAA
AAGAAAAGGGACACGTTCACCACCAGGAAGCTGCACAGTTACAGCAGCATAATCTATTCCATCTTTCTCCTCAAACTTCACTGTTCCATCAGGGGAGACT
TCGAAAGGTCCCTCCATTTCGTCGAGAGTGTAGGTCAAGCGTGTCATGAGCTTAGTGTTCTGGAACTCTGGTGGAGCATTCTTGTTTACACCTTCTGCCT
TGACTGTGAATGAAGTTGGCTCTAGGCAGAATTTCTTGGCATTGTATTTGCCAGGTTTGAAGGCAAATTTGTCTACTCCACTTGCAATTGTTGGGCATTG
GTTTGCAGTTCCAGTTCCCTTTACTTCCAGATATGTCTTGCTTTGAATTTCATCATAGGTCAGATTGCAAGGAGCAAGTGATCCTAGCATTACTGGGGTC
CAACCCAAAAGCCTTTGACACAGTCTGGGTAGACCTGAGCTGGAGGCTGCTGGTCCTGGAAGGCATCCCTCCTGCCTTGGTGGGTTGCAGAAGTGTAGCA
GCTGCTTGTGGTGTGGCTGCCATAGTTTCAGTCTCCTTGCTTCTTCTACCTCTGTGTCTGTGTCTCTTGTGTAAATGGATTCCCTATGAATAATAAGGAA
TAGAAGTGTG