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Detailed information on CNT30592113


BLAST search results

BLAST vs Swiss-Prot:
sp|P23322|PSBO_SOLLC, E-value = 4e-108

BLAST vs NONCODE:
NONSLYT000855, E-value = 7e-25

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674883Musa acuminataSetaria viridis20.4750.1785.91149forward
CNT30547255Musa acuminataIpomoea triloba24.3134.0485.31177forward
CNT30515361Musa acuminataJuglans regia2541.1884.07182forward
CNT30266710Musa acuminataChenopodium quinoa23.920.3582.18174forward
CNT30379569Musa acuminataManihot esculenta21.717.9380.38158forward
CNT30708164Musa acuminataGlycine max32.4218.5281.36236forward
CNT3091587Musa acuminataSolanum tuberosum21.742.8279.75158forward
CNT30290560Musa acuminataTriticum aestivum59.0742.3286.98430forward
CNT30221070Musa acuminataHordeum vulgare24.0475.4387.43175forward
CNT30386646Musa acuminataTriticum turgidum59.0732.6386.28430forward
CNT30567883Musa acuminataActinidia chinensis67.0322.6578.48488forward
CNT3086209Musa acuminataVigna radiata24.5912.5782.12179forward
CNT30544024Musa acuminataBrassica napus17.8624.7180.77130forward
CNT30508746Musa acuminataSolanum lycopersicum27.4724.1579200forward
CNT30147296Musa acuminataMedicago truncatula2531.8780.22182forward
CNT30244672Musa acuminataAvena sativa61.5460.385.27448forward
CNT30614251Musa acuminataArabis alpina17.4544.7281.1127forward
CNT30597992Musa acuminataFraxinus excelsior27.4757.3182.5200forward
CNT3010855Musa acuminataZea mays5064.8885.44364forward
CNT30681118Musa acuminataTriticum urartu59.0735.885.58430forward
CNT30356664Musa acuminataLactuca sativa15.5222.3884.07113forward
CNT30571093Musa acuminataVitis vinifera15.827.5184.35115forward
CNT30704492Musa acuminataPrunus avium22.9417.7881.44167forward
CNT30121175Musa acuminataCitrus clementina15.2524.3481.98111forward
CNT30584070Musa acuminataEchinochloa crusgalli68.9642.6186.45502forward
CNT30497590Musa acuminataDigitaria exilis45.4737.6186.1331forward
CNT3051042Musa acuminataCucumis sativus17.0322.7580.65124forward

Expression of CNT30592113

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MVPVEDDVFLMFSLLSSSSSPLPPAGSATALSYPVEPPLPLGSRNEEPR*

>peptide 2 (35 aa)
RIIIYYSSLHLLFHFQHPYPNVRTMIGSKIQLQKI*

Sequence

>CNT30592113
AGGATTATCATATATTACAGTTCTCTCCATTTATTGTTTCATTTCCAGCATCCATATCCTAATGTAAGAACAATGATAGGAAGTAAGATTCAACTTCAGA
AAATATAAACTATTACATCATTAATACGTCTGTTAATTATTTCATAGATCAGAACAATCAAGCCAGCAGCAAGAGAAAGAGAGAGAGAGAGATGGTATAT
ATATAGCTGACGCAGAAAGCTCTTCTCTACGACTCAAGCTGAGCATACCAGATGCCCTGGATCTTCACATCCTTGGGCGTCTTCGCCCCTAGGTCGGTGT
CCGACGGCTGAAAGCTCTCGAACACGCCGATCACCTCGCCCGTCTCTGGCTTGCTCTTGGTGACGCTCAGCGTGATGGTCCCCGTGGAGGACGACGTGTT
CTTGATGTTCTCCTTGCTCAGCTCCTCCTCGTCTCCCCTCCCTCCGGCGGGCAGCGCCACCGCGTTGTCGTACCCGGTGGAGCCCCCCCTCCCCTTGGGG
TCCAGGAACGAGGAGCCCCGGTAGCTGGGCACCAGGAACTTGCCGCTGAAGCTCTCGGGCTTGCCGGAGGCCACCAGCTGCTTGATGGTGAAGAGAAAGG
GAACGCGCTCGCCGCCGGGAAGCTGCACAGTGACGGCAGCGTAGTCGATTCCGTCCTTCTCCTCGAACTTGACGGCGCCGTCGGGGGAGACCTCGAAGGG
CCCCTCAATCTCGTCCAGCGTGTAGGTG