Detailed information on CNT30515294


BLAST search results

BLAST vs Swiss-Prot:
sp|P84989|PSBO_POPEU, E-value = 3e-08

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675069Juglans regiaSetaria viridis18.5642.4284.13126forward
CNT30266743Juglans regiaChenopodium quinoa17.5332.5188.24119forward
CNT30196966Juglans regiaPisum sativum9.2826.2588.8963forward
CNT3086209Juglans regiaVigna radiata20.329.6987.68138forward
CNT30607754Juglans regiaGossypium raimondii14.8724.5191.09101forward
CNT30718209Juglans regiaMalus domestica golden26.813.5283.52182forward
CNT30704492Juglans regiaPrunus avium23.7117.1585.71161forward
CNT30319471Juglans regiaAsparagus officinalis17.2339.2682.91117forward
CNT30121163Juglans regiaCitrus clementina15.7643.1582.24107forward

Expression of CNT30515294

Peptides detected in this lncRNA

>peptide 1 (86 aa)
MSLVFWNAGGEFLFTPSALTVNAVGSRPKDLETLCEDLSCRLLLEDTTPTLAGCMSVAAACREAAIVVFKADLFTHPQKLVFIYIP*

>peptide 2 (60 aa)
MINQAEHTRFPGSSHPLESLLPNQQLNSHGCVVNAIFFLELDGAVGGHLERSLDFIEGVG*

>peptide 3 (42 aa)
QTIIILIYKVDHNLSAASPFLSQQGIQFSNSFNLQQQNLNRQ*

Sequence

>CNT30515294
CACAAACCATCATAATATTAATATACAAAGTGGATCATAATCTCAGTGCTGCTTCTCCATTTTTGTCACAACAGGGAATTCAGTTTAGCAATAGCTTCAA
CTTACAACAACAAAATCTGAATCGACAGTGAAAATGATCATGTTTTTTAAAAGAAAAAAGAGAGAGAATAAAAAAACAGGAAAATAAAAAAAAAGGTCTA
TGATCAATCAAGCTGAGCATACCAGATTCCCTGGATCTTCACATCCTTTGGAGTCTTTGCTCCCAAATCAGCAGCTGAACAGTCACGGCTGCGTAGTCAA
TGCCATCTTTTTCCTCGAACTTGATGGCGCCGTCGGGGGACACCTCGAAAGGTCCCTCGATTTCATCGAGGGTGTAGGTTAAGCGGGTCATGAGCTTGGT
GTTTTGGAACGCAGGTGGGGAATTCTTGTTCACGCCCTCAGCTTTGACAGTGAATGCAGTTGGTTCCAGGCCAAAGGACTTGGAAACACTCTGTGAAGAC
CTCAGCTGTAGACTGCTCCTAGAAGACACGACACCCACCTTGGCGGGTTGCATGAGTGTAGCCGCTGCTTGCAGGGAGGCTGCCATTGTTGTGTTCAAAG
CTGATCTCTTCACTCACCCTCAGAAACTAGTTTTTATCTATATTCCGTGAGACAACCAAAAGAGAAGGTTTTTGTGTGG