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Detailed information on CNT30342712


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40459|PSBO_TOBAC, E-value = 1e-153

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30317789Eragrostis tefCorylus avellana16.7871.9282.88146forward
CNT30710612Eragrostis tefGlycine max28.8524.3282.87251forward
CNT3042430Eragrostis tefPrunus dulcis27.1321.6780.51236forward
CNT30220813Eragrostis tefHordeum vulgare14.2544.7795.16124forward
CNT3086209Eragrostis tefVigna radiata29.8918.2679.62260forward
CNT30238377Eragrostis tefBrassica oleracea29.7748.2380.69259forward
CNT30477612Eragrostis tefArabidopsis halleri24.1442.1779.52210forward
CNT30621504Eragrostis tefCajanus cajan26.0914.480.18227forward
CNT30571041Eragrostis tefVitis vinifera17.2441.3280.67150forward
CNT30557734Eragrostis tefPanicum hallii33.5641.4894.18292forward

Expression of CNT30342712

Peptides detected in this lncRNA

>peptide 1 (70 aa)
MSLVFWNSGGAFLAMPSALTVKDVGSRQNFFMLYLPDLKGKESTPPSMVGHWFAVPVPFTSMYVLLWISS*

>peptide 2 (64 aa)
MTSPVSGLLLVTLKVMLPVDDAAFLMFSLTSSSSSPRPPAGSATALSYPVEPPRPLGSRKDEPR*

Sequence

>CNT30342712
TTCAAACCAACAGCCCGAATTTTTGCATTAATTAATTGATAGATACAAGATGCCTCCTCCATTGTTCTCAAAAGTATTATTGCCACATGATAATTAACAC
GATTACGGACGGGCGGTCGTCTAGTTAGACTCGAGCTGCGCGTACCAGACCCCCTGGATCTTGACATCCTTGGGCGCCTTGGCTCCCAGGTCGGTGTCGG
ACGGCTGCACGCTCTCAAAGACGCCGATGACCTCTCCAGTGTCCGGGTTGCTCTTGGTGACGCTCAAGGTGATGTTGCCCGTGGACGACGCGGCGTTCTT
GATGTTCTCCTTGACGAGCTCCTCCTCGTCTCCTCGTCCTCCGGCGGGGAGCGCGACGGCGTTGTCGTACCCGGTGGAGCCACCACGGCCCTTGGGGTCA
AGGAAGGACGAGCCACGGTAGCTGGGCACGAGGAACGGCCCGCCGAAGCTCTCGGGCTTGCCGGTGGCGACGAGCTGCTTGACGGTGAAGAGGAACGGCA
CGCGCTCGCCTCCCGGGAGCTGCACCGTGACGGCGGCGTAGGTGCCGTCGGAGCCGACCTCGAGCGGGCCCTCGATCTCGTCCAGGGTGTAGGTGAGGCG
GGTCATGAGCTTGGTCTTCTGGAACTCGGGCGGCGCGTTCTTGGCGATGCCCTCCGCCTTGACGGTGAAGGACGTCGGCTCAAGGCAGAACTTCTTCATG
TTGTACTTGCCGGACTTGAAGGGGAAGGAATCCACGCCGCCGTCGATGGTCGGGCACTGGTTCGCTGTGCCCGTGCCCTTCACCTCCATGTACGTCTTGC
TCTGGATCTCGTCGTAGGTGAGACGCTTCGGAGTGCCCTCCGCGCTCGCGCCCTGCACCGCACCGCAAGC