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Detailed information on CNT30385696


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40459|PSBO_TOBAC, E-value = 5e-61

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30547255Triticum turgidumIpomoea triloba53.3341.5484.26216forward
CNT30515312Triticum turgidumJuglans regia43.4611.2581.25176forward
CNT30700663Triticum turgidumQuercus lobata25.1919.2584.31102forward
CNT30377797Triticum turgidumArabidopsis thaliana13.8322.1392.8656forward
CNT30266710Triticum turgidumChenopodium quinoa45.9321.7582.26186forward
CNT30524993Triticum turgidumPhaseolus vulgaris43.4615.3482.39176forward
CNT30711854Triticum turgidumGlycine max23.4612.8786.3295forward
CNT3042430Triticum turgidumPrunus dulcis36.7913.6879.87149forward
CNT3086209Triticum turgidumVigna radiata23.466.6785.2695forward
CNT309111Triticum turgidumZea mays58.5232.2993.25237forward
CNT30718209Triticum turgidumMalus domestica golden45.6813.7482.16185forward
CNT30348024Triticum turgidumEragrostis tef58.5238.4193.67237forward
CNT30368337Triticum turgidumSorghum bicolor58.5235.6494.09237forward
CNT30621504Triticum turgidumCajanus cajan35.319.0782.52143forward
CNT30356640Triticum turgidumLactuca sativa45.9327.9381.72186forward
CNT30704492Triticum turgidumPrunus avium44.9419.3881.32182forward
CNT30319039Triticum turgidumAsparagus officinalis33.5857.6386.03136forward
CNT30584058Triticum turgidumEchinochloa crusgalli58.5218.7293.67237forward
CNT30724288Triticum turgidumLupinus angustifolius44.4415.7181.11180forward
CNT3040045Triticum turgidumMarchantia polymorpha22.727.9989.1392forward

Expression of CNT30385696

Peptides detected in this lncRNA

>peptide 1 (99 aa)
RTPVAGHEEGPAEALGLAGSDELLDGEEEGHSLASGELHGDGRVVDAVLLLELEGAVGADLERAFHLVKGVGETGHELGFLEGRRWAPGRTSSSRTCRP*

>peptide 2 (58 aa)
MSLVFWKAGGGLQAELLHLVLAGLEGEGVDAAVDGRALVRGAGTLHLHVGLALDLVEGQ

Sequence

>CNT30385696
GACGAACCCCTGTAGCTGGGCACGAGGAAGGGCCCGCTGAAGCTCTCGGGCTTGCCGGTAGCGACGAGCTGCTTGACGGTGAAGAGGAAGGGCACTCGCT
CGCCTCCGGGGAGCTGCACGGTGACGGCCGCGTAGTCGATGCCGTCCTTCTCCTCGAACTTGAGGGTGCCGTCGGCGCCGACCTCGAGCGGGCCTTCCAT
CTCGTCAAGGGTGTAGGTGAGACGGGTCATGAGCTTGGTTTTCTGGAAGGCCGGCGGTGGGCTCCAGGCAGAACTTCTTCATCTCGTACTTGCCGGCCTT
GAAGGGGAAGGAGTCGACGCCGCCGTCGATGGTCGGGCACTGGTTCGCGGTGCCGGTACCCTTCACCTCCATGTAGGTCTTGCTCTGGATCTCGTCGAAG
GTCAG