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Detailed information on CNT30718209


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40459|PSBO_TOBAC, E-value = 7e-116

BLAST vs NONCODE:
NONGMAT000837, E-value = 7e-51

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30535986Malus domestica goldenEucalyptus grandis23.9243.9980.43322forward
CNT30317789Malus domestica goldenCorylus avellana10.770.9484.72144forward
CNT30547255Malus domestica goldenIpomoea triloba19.0949.4283.66257forward
CNT30515294Malus domestica goldenJuglans regia13.5226.883.52182forward
CNT30700663Malus domestica goldenQuercus lobata25.1163.7781.95338forward
CNT30374900Malus domestica goldenArabidopsis thaliana15.9736.8883.72215forward
CNT30277684Malus domestica goldenChenopodium quinoa36.4854.881.47491forward
CNT30727933Malus domestica goldenCorchorus capsularis31.828.6382.71428forward
CNT30379569Malus domestica goldenManihot esculenta30.9847.3382.97417forward
CNT30524993Malus domestica goldenPhaseolus vulgaris25.2629.6482.06340forward
CNT30711968Malus domestica goldenGlycine max31.859.2882.24428forward
CNT3042430Malus domestica goldenPrunus dulcis22.5927.9291.78304forward
CNT3091587Malus domestica goldenSolanum tuberosum22.8883.4779.87308forward
CNT30287195Malus domestica goldenTriticum aestivum13.7420.8882.16185forward
CNT30221336Malus domestica goldenHordeum vulgare14.8628.9482200forward
CNT30385696Malus domestica goldenTriticum turgidum13.7445.6882.16185forward
CNT30567882Malus domestica goldenActinidia chinensis28.3118.4182.41381forward
CNT3086209Malus domestica goldenVigna radiata32.1730.4180.6433forward
CNT30543261Malus domestica goldenBrassica napus17.0142.4982.97229forward
CNT30238377Malus domestica goldenBrassica oleracea17.0142.6483.84229forward
CNT30508746Malus domestica goldenSolanum lycopersicum20.6533.5784.53278forward
CNT30147296Malus domestica goldenMedicago truncatula36.4885.9980.04491forward
CNT30435956Malus domestica goldenAegilops tauschii13.6721.982.61184forward
CNT30242448Malus domestica goldenAvena sativa14.8637.5281.5200forward
CNT30657734Malus domestica goldenTriticum dicoccoides13.7420.4682.16185forward
CNT30259787Malus domestica goldenBrassica rapa16.3440.2984.09220forward
CNT30612619Malus domestica goldenArabis alpina9.7334.5685.5131forward
CNT30597992Malus domestica goldenFraxinus excelsior14.8657.3182.5200forward
CNT309111Malus domestica goldenZea mays15.8229.0283.57213forward
CNT30207216Malus domestica goldenHelianthus annuus15.9739.4579.07215forward
CNT30626592Malus domestica goldenDaucus carota37.965884.15511forward
CNT30681259Malus domestica goldenTriticum urartu13.7425.7382.7185forward
CNT30348024Malus domestica goldenEragrostis tef20.2144.0881.99272forward
CNT30477612Malus domestica goldenArabidopsis halleri13.2235.7482.02178forward
CNT30368337Malus domestica goldenSorghum bicolor15.0830.5383.25203forward
CNT30356640Malus domestica goldenLactuca sativa26.653.7580.17358forward
CNT30408540Malus domestica goldenPapaver somniferum23.7775.1278.75320forward
CNT30571041Malus domestica goldenVitis vinifera15.356.7583.01206forward
CNT30704492Malus domestica goldenPrunus avium28.0140.1589.39377forward
CNT30121175Malus domestica goldenCitrus clementina11.5233.9983.23155forward
CNT3036059Malus domestica goldenCucumis melo25.1155.2381.07338forward
CNT30584058Malus domestica goldenEchinochloa crusgalli20.9522.2781.91282forward
CNT30724288Malus domestica goldenLupinus angustifolius37.1543.6383.4500forward
CNT3051042Malus domestica goldenCucumis sativus24.6760.9281.33332forward

Expression of CNT30718209

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MTKFQSQFIPKNEIQLSLAYVVVRLSIQNELMRFISILYEIK*

>peptide 2 (43 aa)
MICYYDCYPNNITYQISEIENITLVCWDDPVLQINGEHVDIAI*

>peptide 3 (62 aa)
MSLVFWNSGGAFLLTLSALTVKDVGSRQNFLAVYLPGLKANASVPPSMVGHWLAVPVPFTSK*

>peptide 4 (43 aa)
MLRFLHRWLGTGWQFRFPSLPSRSASLEIPLHLLPENTNGGQQ*

>peptide 5 (40 aa)
GVLLCQLLLVSSATCRQRNRIVVTGRSSSSLGVQERGSAV*

>peptide 6 (30 aa)
MAPSQRPWRHSERTSAAHWSSPTRRPWSAA*

Sequence

>CNT30718209
GGTGTTCTCCTTTGCCAACTCCTCCTCGTCTCCTCTGCCACCTGCCGGCAACGCAACCGCATTGTCGTAACCGGTAGATCCTCCTCTTCCCTTGGGGTCC
AAGAAAGAGGATCCGCGGTATGATGGTACTAGAAACTCTCCTGTGAAGTTGTCAGGCTTGCCAGAGGCTACGAGCTGCTTGATGGTAAAGAGGAAGGGCA
CGCGCTCACCTCCCGGGAGCTGGACTGTCACTGCAGCGTAGTCAATTCCGTCTTTCTCTTCAAACTTGACGGTGCCATCTGGGGCAACTTCGAAAGGTCC
TTCGATCTCATCGAGAGTGTAGGTTAGGCGGGTCATGAGCTTGGTGTTTTGGAACTCTGGTGGAGCATTCTTGCTCACACTCTCTGCCTTGACTGTGAAG
GATGTTGGCTCTAGGCAGAACTTCTTGGCAGTGTACTTGCCAGGCTTGAAAGCGAATGCTTCGGTTCCTCCATCGATGGTTGGGCACTGGTTGGCAGTTC
CGGTTCCCTTCACTTCCAAGTAGGTCAGCCTCTTTGGAGATCCCTCTGCACCTGCTCCCTGAAAACACAAATGGTGGCCAACAATGACCAAATTTCAATC
GCAATTCATCCCCAAAAATGAAATCCAACTATCACTGGCATATGTTGTTGTCAGACTGTCAATCCAAAATGAACTAATGAGATTTATATCCATACTATAT
GAAATCAAATGATGCTACATTATATTGTTAGATTCTCAATCCCAATTATCAGATGAGCGTACGTCCATATGATATGCTATTATGATTGTTATCCTAACAA
CATAACATATCAAATATCCGAAATAGAGAACATTACTCTCGTCTGTTGGGACGATCCAGTTCTACAAATTAATGGAGAACATGTGGATATTGCTATATAA
TTGCACATACAACTAGTCCAACTAATGTTTACCCCCTAACTATAGTCCATAAGTAACTAGCAAGTACTACTTAACATACATTCACAAAAGGTCAAATGCA
AACAACTAATCATTGTTCATCTTCTGCACCGAAATTTCAATCACATGAAGCAAAAAACTGAGGAATGAAATGGAATTAGCATAACATACCGAGACAACGA
GGGCGGAAGTAGCAAGAGCAAATCCAGCAATCTTAGAAGCATCAAGGCACTTGTGAGCCAAGTCCTTGAGATCAGATTGCAAAGAGCAAGTGAGCCTAGC
AGAGGCAGATGGCTCCAAGCCAAAGGCCTTGGAGACACTCTGAGAGGACCTCAGCTGCACACTGGTCCTCGCCGACACGCCGACCTTGGTCGGCTGCATG
AGCGTGGCAGCTGCTTGGAGGGAGGCTGCCATGGTTGCTGGTTCAC