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Detailed information on CNT30368337


BLAST search results

BLAST vs Swiss-Prot:
sp|O49079|PSBO_FRIAG, E-value = 3e-90

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675069Sorghum bicolorSetaria viridis32.6373.0696.31217forward
CNT30547255Sorghum bicolorIpomoea triloba33.9843.4687.61226forward
CNT30515312Sorghum bicolorJuglans regia26.6211.3281.92177forward
CNT30377797Sorghum bicolorArabidopsis thaliana10.8328.4687.572forward
CNT30266710Sorghum bicolorChenopodium quinoa33.6826.281.7224forward
CNT30524993Sorghum bicolorPhaseolus vulgaris56.2432.6180.75374forward
CNT30710612Sorghum bicolorGlycine max35.4922.8781.78236forward
CNT30122105Sorghum bicolorPhyscomitrium patens11.4322.0389.4776forward
CNT30221336Sorghum bicolorHordeum vulgare38.3536.991.37255forward
CNT30385696Sorghum bicolorTriticum turgidum35.6458.5294.09237forward
CNT3086209Sorghum bicolorVigna radiata35.7916.7179.83238forward
CNT30542247Sorghum bicolorBrassica napus19.721.9882.44131forward
CNT30238377Sorghum bicolorBrassica oleracea21.0526.0782.86140forward
CNT30259787Sorghum bicolorBrassica rapa19.723.9983.21131forward
CNT30597992Sorghum bicolorFraxinus excelsior14.5927.7984.5497forward
CNT309111Sorghum bicolorZea mays42.7138.6997.54284forward
CNT30607754Sorghum bicolorGossypium raimondii15.7925.4981.9105forward
CNT30207216Sorghum bicolorHelianthus annuus33.6841.180.36224forward
CNT30718209Sorghum bicolorMalus domestica golden30.5315.0883.25203forward
CNT30626592Sorghum bicolorDaucus carota27.822180.54185forward
CNT30348024Sorghum bicolorEragrostis tef65.5670.6695.41436forward
CNT30355286Sorghum bicolorLactuca sativa41.3545.379.64275forward
CNT30704492Sorghum bicolorPrunus avium27.8219.780185forward
CNT30319324Sorghum bicolorAsparagus officinalis23.3148.5985.81155forward
CNT30724288Sorghum bicolorLupinus angustifolius27.0715.7181.11180forward

Expression of CNT30368337

Peptides detected in this lncRNA

>peptide 1 (70 aa)
MSLVFWNSGGAFLAMPSALTVKDVGSKHSFFIWYLPALNGNASTPPSMVGHWFAVPVPFTSMYVKLWIWS*

>peptide 2 (34 aa)
LKPTARICINRYIHDSSSSALQSSPWYTFPRSDP*

Sequence

>CNT30368337
ATTTAAAACCAACAGCCCGAATTTGCATTAATAGGTACATACACGACTCCTCCTCCTCTGCTCTCCAAAGTTCTCCATGGTACACTTTCCCAAGATCCGA
TCCATGACGGTTCCGACGCCTAGTAGCAGTTAGAACGAACGAATCACTCGAGCTGCGCGTACCAGATCCCCTGGATCTTGACATCCTTGGGCGCCTTGGC
GCCGAGGAAAGAGGAGCCACGGTAGCTGGGCACGAGGAATGGCCCGCCGAAGCTCTCGGGCTTGCCGGTGGCGACGAGCTGCTTGACGGTGAAGAGGAAC
GGCACGCGCTCGCCTCCCGGGAGCTGCACGGTGACGGCGGCGTAGTCGATGCCGTCCTTCTCCTCGAACTTGAGGGTGCCGTCGGAGCCGACCTCGAGCG
GGCCCTCGATCTCGTCCAGCGTGTAGGTGAGGCGGGTCATGAGCTTGGTCTTCTGGAACTCGGGCGGCGCGTTCTTGGCGATGCCCTCCGCCTTGACCGT
GAAGGACGTCGGCTCCAAGCACAGCTTCTTCATCTGGTACTTGCCGGCCTTGAACGGGAACGCCTCCACGCCGCCGTCGATGGTCGGGCACTGGTTCGCC
GTGCCCGTGCCCTTCACCTCCATGTACGTCAAGCTCTGGATCTGGTCGTAGGGACCACTGGAGAA