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Detailed information on CNT30356640


BLAST search results

BLAST vs Swiss-Prot:
sp|P23322|PSBO_SOLLC, E-value = 1e-89

BLAST vs NONCODE:
NONTCAT000011, E-value = 7e-65

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30377797Lactuca sativaArabidopsis thaliana11.8631.2387.3479forward
CNT30379731Lactuca sativaManihot esculenta48.0528.8383.44320forward
CNT30524993Lactuca sativaPhaseolus vulgaris56.9133.0482.32379forward
CNT30181115Lactuca sativaSecale cereale27.9314.0381.18186forward
CNT30287195Lactuca sativaTriticum aestivum27.9320.9981.72186forward
CNT30221070Lactuca sativaHordeum vulgare14.7142.2483.6798forward
CNT30385696Lactuca sativaTriticum turgidum27.9345.9381.72186forward
CNT3086209Lactuca sativaVigna radiata46.8521.9180.77312forward
CNT30508746Lactuca sativaSolanum lycopersicum60.5148.6781.64403forward
CNT30147296Lactuca sativaMedicago truncatula57.0666.5581.84380forward
CNT30436686Lactuca sativaAegilops tauschii27.9317.2981.18186forward
CNT30657734Lactuca sativaTriticum dicoccoides27.9320.5881.72186forward
CNT30718209Lactuca sativaMalus domestica golden53.7526.680.17358forward
CNT30680645Lactuca sativaTriticum urartu27.9319.4481.72186forward
CNT30571041Lactuca sativaVitis vinifera30.4855.9284.24203forward
CNT3036059Lactuca sativaCucumis melo53.358.0181.13355forward
CNT30724288Lactuca sativaLupinus angustifolius48.0527.9281.25320forward

Expression of CNT30356640

Peptides detected in this lncRNA

>peptide 1 (57 aa)
PITSPVSGLLEVTLKVIFPVDAATFFTFSLESSSSSPLPPAGKATALSYPMALEILH*

>peptide 2 (99 aa)
MSLVFWNSGVEFLLTPSALTVNDVGSRQNFLALYLPDLKANPVTPPSMVGHWLAVPVPFTSMYALQMLGEDFSCRRPETPTLVGCMKVAAACSEAAIAAS

Sequence

>CNT30356640
CTCCGATCACCTCTCCAGTATCCGGCTTGCTTGAAGTGACACTCAAAGTAATCTTTCCCGTTGATGCTGCAACATTCTTTACGTTCTCTTTAGAAAGCTC
CTCTTCATCTCCCCTCCCTCCTGCCGGCAAAGCAACCGCATTATCATATCCGATGGCACTAGAAATTCTCCACTAAAGCTCTCTGGTTTCCCAGATGCTA
CGAGCTGTTTGATTGTGAATAGGAATGGCACACGTTCACCTCCGGGAAGCTGAACAGTCACAGCAGCGTAGTCGATTCCGTCTTTCTCCTCGAACTTAAT
GGATCCATCAGGAGACACTTCGAGGGGACCCTCGATCTCGTCAAGGGTGTAGGTCAAACGGGTCATGAGTTTGGTTTTTTGGAACTCGGGTGTAGAGTTC
TTGCTTACACCTTCGGCTTTGACTGTGAATGATGTGGGTTCAAGGCAGAATTTCTTGGCGTTGTATTTGCCGGACTTGAAAGCAAACCCAGTAACTCCGC
CGTCGATGGTTGGGCATTGGTTAGCTGTTCCGGTTCCTTTTACTTCCATGTATGCCTTGCAGATGCTCGGAGAAGACTTTAGCTGCAGACGGCCGGAGAC
ACCCACCTTGGTTGGTTGCATGAAAGTTGCCGCTGCTTGCAGTGAAGCTGCCATTGCTGCTTCTTT