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Detailed information on CNT30479425


BLAST search results

BLAST vs Swiss-Prot:
sp|P0DH96|CALM4_ARATH, E-value = 3e-84

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693832Arabidopsis halleriOryza sativa30.898.887.85181forward
CNT30672655Arabidopsis halleriSetaria viridis53.7559.4383.81315forward
CNT30530065Arabidopsis halleriEucalyptus grandis22.1838.3581.54130forward
CNT30545709Arabidopsis halleriIpomoea triloba53.9233.8381.96316forward
CNT30378266Arabidopsis halleriArabidopsis thaliana24.9142.8291.1146forward
CNT30617519Arabidopsis halleriSesamum indicum64.1618.7279.52376forward
CNT30379145Arabidopsis halleriManihot esculenta44.257.5681.47259forward
CNT30487677Arabidopsis halleriOlea europaea25.641.3282.67150forward
CNT30504265Arabidopsis halleriNicotiana attenuata22.1842.6283.85130forward
CNT30156599Arabidopsis halleriPistacia vera64.6850.2783.11379forward
CNT3097357Arabidopsis halleriSolanum tuberosum63.4818.682.26372forward
CNT30125031Arabidopsis halleriPhyscomitrium patens45.937.5781.41269forward
CNT30387589Arabidopsis halleriTriticum turgidum37.210.4882.57218forward
CNT30560106Arabidopsis halleriActinidia chinensis64.3370.8682.23377forward
CNT30586817Arabidopsis halleriMusa acuminata31.7418.6479.57186forward
CNT3085845Arabidopsis halleriVigna radiata38.7417.3383.7227forward
CNT30234205Arabidopsis halleriBrassica oleracea32.4236.6185.26190forward
CNT30553673Arabidopsis halleriOryza glaberrima59.94684.05351forward
CNT30147448Arabidopsis halleriMedicago truncatula22.3525.7485.5131forward
CNT30248464Arabidopsis halleriAvena sativa30.0328.984.09176forward
CNT30311950Arabidopsis halleriCamelina sativa63.9952.0188.27375forward
CNT3080440Arabidopsis halleriBrassica juncea32.2534.6885.19189forward
CNT3011614Arabidopsis halleriZea mays29.6923.1783.33174forward
CNT30607166Arabidopsis halleriGossypium raimondii28.8446.384.02169forward
CNT30231884Arabidopsis halleriAnanas comosus55.6330.9380.98326forward
CNT30216184Arabidopsis halleriKalanchoe fedtschenkoi32.5939.383.77191forward
CNT30204543Arabidopsis halleriHelianthus annuus17.5847.0384.47103forward
CNT30625935Arabidopsis halleriDaucus carota24.7410.281.38145forward
CNT30346128Arabidopsis halleriEragrostis tef53.9252.7582.59316forward
CNT30367748Arabidopsis halleriSorghum bicolor38.5758.181.42226forward
CNT30621990Arabidopsis halleriCajanus cajan25.4322.5181.88149forward
CNT30596276Arabidopsis halleriOryza meridionalis28.1629.6287.88165forward
CNT30483255Arabidopsis halleriChara braunii22.0111.682.17129forward
CNT30104901Arabidopsis halleriOryza longistaminata30.8911.1887.85181forward
CNT3026117Arabidopsis halleriPopulus trichocarpa22.3530.5483.97131forward
CNT30120491Arabidopsis halleriCitrus clementina41.9869.384.15246forward
CNT3037982Arabidopsis halleriCucumis melo44.0346.7481.01258forward
CNT30332036Arabidopsis halleriDioscorea rotundata30.5556.8382.12179forward
CNT30149356Arabidopsis halleriBrachypodium distachyon38.579.6884.07226forward
CNT30101815Arabidopsis halleriOryza rufipogon38.7441.8885.46227forward
CNT30576402Arabidopsis halleriOryza barthii54.9542.7683.85322forward
CNT30496859Arabidopsis halleriDigitaria exilis29.6928.3882.76174forward
CNT30116198Arabidopsis halleriOryza nivara35.8415.9182.86210forward
CNT30594303Arabidopsis halleriEragrostis curvula63.8258.3586.1374forward
CNT30175579Arabidopsis halleriVigna angularis37.8838.3483.78222forward
CNT30335796Arabidopsis halleriCynara cardunculus31.9146.9882.35187forward

Expression of CNT30479425

Peptides detected in this lncRNA

>peptide 1 (74 aa)
MNPFWSLSNTLKASFSSSSESVSFIFLAIRFRNSGKSMVPFPSASTSLIMSCSSASVGFCPSDRITVPSSFVVMQ

>peptide 2 (38 aa)
MAQLCSGYEPVLVFVEHPESFFQLFLRVCILHLLSHKV*

Sequence

>CNT30479425
GTAACTTTTTCATAATAAAAAGCTTTGCGACCACAGTAGTTACCAAAATCTAAACATGCCATTATGCCAACAAGAAAAAAAAACCAACAAAATAAAAAAG
ATAGTCACAAATTCAGTCTGCTAAAACCTTATAGAAACTACTAGGCCTCAAATCAAACCCAAGACACTAAAGGTCGAATCTTTTTTGTAGAGAGTAAAAG
CCCAAAAGGTCATCACTTAGCCATCATAATCTTGACAAACTCCTCGTAGTTTATCTGACCATCTCCATCAACATCAGCTTCACGGATCATCTCCTCGACC
TCTTCATCAGTCAGTTTCTCACCTAAATTAGTCATCACATGGCGCAGCTCTGCAGCGGATATGAACCCGTTCTGGTCTTTGTCGAACACCCTGAAAGCTT
CTTTCAGCTCTTCCTCCGAGTCTGTATCCTTCATCTTCTTAGCCATAAGGTTTAGGAACTCAGGGAAGTCAATGGTGCCGTTTCCATCAGCATCAACCTC
GTTGATCATGTCTTGTAGCTCAGCTTCTGTTGGGTTCTGCCCTAGTGACCGCATCACTGTTCCCAGCTCCTTTGTGGTGATGCAAC