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Detailed information on CNT30346128


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7DMP0|CALM2_SOLTU, E-value = 6e-43

BLAST vs NONCODE:
NONSLYT003545, E-value = 1e-56

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672655Eragrostis tefSetaria viridis53.7660.7588.82322forward
CNT30545709Eragrostis tefIpomoea triloba53.0934.0580.5318forward
CNT30378266Eragrostis tefArabidopsis thaliana15.8627.8691.5895forward
CNT30617519Eragrostis tefSesamum indicum33.7210.0586.14202forward
CNT30379145Eragrostis tefManihot esculenta47.4163.1182.39284forward
CNT30487977Eragrostis tefOlea europaea17.8641.1587.85107forward
CNT30504265Eragrostis tefNicotiana attenuata19.0337.3884.21114forward
CNT30156599Eragrostis tefPistacia vera52.7541.9182.91316forward
CNT3097357Eragrostis tefSolanum tuberosum52.7515.880.7316forward
CNT30125031Eragrostis tefPhyscomitrium patens24.2120.2580.69145forward
CNT30387589Eragrostis tefTriticum turgidum39.0711.2482.91234forward
CNT30560106Eragrostis tefActinidia chinensis52.7559.481.65316forward
CNT3085845Eragrostis tefVigna radiata31.5514.4387.3189forward
CNT30234205Eragrostis tefBrassica oleracea18.5321.3991.89111forward
CNT30553743Eragrostis tefOryza glaberrima53.7643.3488.51322forward
CNT30147448Eragrostis tefMedicago truncatula19.5322.9985.47117forward
CNT30248464Eragrostis tefAvena sativa33.8933.3383.25203forward
CNT30311950Eragrostis tefCamelina sativa52.7543.8384.18316forward
CNT3073928Eragrostis tefBrassica juncea35.0647.9584.29210forward
CNT3014113Eragrostis tefZea mays23.5430.1992.2141forward
CNT30607166Eragrostis tefGossypium raimondii18.730.6889.29112forward
CNT30231884Eragrostis tefAnanas comosus47.2526.8582.69283forward
CNT30216184Eragrostis tefKalanchoe fedtschenkoi35.8944.2483.72215forward
CNT30204543Eragrostis tefHelianthus annuus19.8754.3484.87119forward
CNT30479425Eragrostis tefArabidopsis halleri52.7553.9282.59316forward
CNT30367748Eragrostis tefSorghum bicolor42.966.0785.6257forward
CNT30621990Eragrostis tefCajanus cajan27.8825.2386.23167forward
CNT30596276Eragrostis tefOryza meridionalis19.220.6594.78115forward
CNT3026117Eragrostis tefPopulus trichocarpa15.3621.4588.0492forward
CNT30120491Eragrostis tefCitrus clementina33.2256.0686.93199forward
CNT30332036Eragrostis tefDioscorea rotundata17.3633.0292.31104forward
CNT30149356Eragrostis tefBrachypodium distachyon42.2410.8486.96253forward
CNT30101815Eragrostis tefOryza rufipogon31.3934.6993.62188forward
CNT30576402Eragrostis tefOryza barthii53.7642.7688.51322forward
CNT30496859Eragrostis tefDigitaria exilis72.6270.9682.53435forward
CNT30116198Eragrostis tefOryza nivara38.0617.2780.7228forward
CNT30594303Eragrostis tefEragrostis curvula100.8394.2391.72604forward
CNT30175579Eragrostis tefVigna angularis31.5532.6487.3189forward
CNT30335796Eragrostis tefCynara cardunculus18.227.3987.16109forward

Expression of CNT30346128

Peptides detected in this lncRNA

>peptide 1 (59 aa)
MTWRSSAAEMKPFWSLSKTRKASLSSSSESVSFIFLAIRFRNSGKSIVPLPSASTSLIMS

>peptide 2 (35 aa)
MSLTNPKSFNRRKCKITSQSKRNQVSDIASHDYTT*

Sequence

>CNT30346128
GCAAATTTGACAGGAGATAAAAGATTTGCATAAAAGATACAAAACACAGGAAGCATGAGCTTAACAAATCCTAAAAGCTTCAACAGGCGCAAATGCAAAA
TAACATCACAATCAAAAAGAAACCAGGTATCTGATATCGCTTCCCATGACTACACCACCTAAACCGATCACTACTGAACATTACCCACCTGCATAATGTA
CTCAAAGGACATCACAAAGTACAACTGGTATGCCTGACAATTAGGTTTGCATCAGAGGAACTTTATTTCATAGGACACTCCTCACTTAGCCATCATGACC
TTGACAAACTCCTCGTAGTTGATCTGGCCATCGCCATCAACATCAGCCTCACGGATCATCTCGTCAACTTCCTCATCAGTCAGCTTCTCCCCAAGTCAGC
TTCTCCCCAAGGTTGGTCATGACATGGCGAAGCTCAGCAGCTGAGATGAAACCGTTCTGGTCCTTGTCGAAGACACGGAAGGCTTCCTTGAGCTCCTCCT
CAGAGTCAGTGTCCTTCATCTTCCTTGCCATCAGGTTCAGGAACTCCGGGAAGTCAATAGTCCCGTTGCCATCAGCATCAACCTCGTTGATCATGTCCT