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Detailed information on CNT30234205


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7DMP0|CALM2_SOLTU, E-value = 4e-40

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673553Brassica oleraceaSetaria viridis44.5155.1385.71231forward
CNT30530065Brassica oleraceaEucalyptus grandis18.1127.7386.1794forward
CNT30545709Brassica oleraceaIpomoea triloba37.1920.6683.94193forward
CNT30617519Brassica oleraceaSesamum indicum31.418.1180.98163forward
CNT30379145Brassica oleraceaManihot esculenta37.9643.7884.77197forward
CNT30487977Brassica oleraceaOlea europaea20.4240.7784.91106forward
CNT30504265Brassica oleraceaNicotiana attenuata22.7438.6982.2118forward
CNT30156595Brassica oleraceaPistacia vera36.0323.783.96187forward
CNT3097357Brassica oleraceaSolanum tuberosum29.097.5584.77151forward
CNT30387589Brassica oleraceaTriticum turgidum36.038.9986.63187forward
CNT30560106Brassica oleraceaActinidia chinensis30.8330.0884.38160forward
CNT30586817Brassica oleraceaMusa acuminata44.5123.1585.28231forward
CNT30553743Brassica oleraceaOryza glaberrima37.3826.1189.18194forward
CNT30248464Brassica oleraceaAvena sativa43.1636.7887.5224forward
CNT30311950Brassica oleraceaCamelina sativa36.6126.3586.84190forward
CNT3073928Brassica oleraceaBrassica juncea80.5495.4393.06418forward
CNT30259872Brassica oleraceaBrassica rapa33.7275.1195.43175forward
CNT3011614Brassica oleraceaZea mays44.5130.7684.42231forward
CNT30607166Brassica oleraceaGossypium raimondii33.3347.484.39173forward
CNT30231884Brassica oleraceaAnanas comosus30.2514.986.62157forward
CNT30216184Brassica oleraceaKalanchoe fedtschenkoi30.6432.7283.02159forward
CNT30204543Brassica oleraceaHelianthus annuus15.6136.9986.4281forward
CNT30346128Brassica oleraceaEragrostis tef21.3918.5391.89111forward
CNT30479425Brassica oleraceaArabidopsis halleri36.6132.4285.26190forward
CNT30367843Brassica oleraceaSorghum bicolor44.5132.5486.15231forward
CNT30483255Brassica oleraceaChara braunii24.8611.684.5129forward
CNT3026117Brassica oleraceaPopulus trichocarpa21.5826.1183.93112forward
CNT3037982Brassica oleraceaCucumis melo36.9934.7883.33192forward
CNT30332036Brassica oleraceaDioscorea rotundata39.1164.4483.74203forward
CNT30148143Brassica oleraceaBrachypodium distachyon44.8945.1685.84233forward
CNT30576402Brassica oleraceaOryza barthii37.3825.7689.18194forward
CNT30497675Brassica oleraceaDigitaria exilis44.5138.7686.58231forward
CNT30116198Brassica oleraceaOryza nivara37.3814.785.57194forward
CNT30594303Brassica oleraceaEragrostis curvula37.3830.2789.69194forward
CNT30335796Brassica oleraceaCynara cardunculus44.5158.0485.28231forward
CNT3039761Brassica oleraceaMarchantia polymorpha219.8182.57109forward

Expression of CNT30234205

Peptides detected in this lncRNA

>peptide 1 (89 aa)
MSQPESSSLSRHHKSFFFMKGMRSLSHHDFNELIVVDLTIAINISFTDHLINFLVGQLLPEVSHHMSELSRGDETVLVFIKHPEGFLEL*

Sequence

>CNT30234205
CGAAACTCGAGAGCAAGAAAACGCATTCACTGAAGAGAAATAACAGAGACGAAAACAAACAATAATAAAAAAAAGAGAGAATATCAAATTGTCAAAGGAT
ATGCAAACCATGAGTTCATACTTCACATAACACTAACCAAAAGCAAAAGACAAATAACAGACAGAAACATGTCGCAACCAGAATCAAGTTCACTGTCAAG
ACATCATAAATCATTCTTTTTTATGAAGGGGATGAGATCACTTAGCCATCATGACTTTAACGAACTCATCGTAGTTGATCTGACCATCGCCATCAACATC
AGCTTCACGGATCATCTCATCAACTTCCTCGTCGGTCAGCTTCTCCCCGAGGTTAGTCATCACATGTCGGAGCTCAGCCGCGGAGATGAAACCGTTCTGG
TCTTTATCAAACACCCTGAAGGCTTCCTTGAACTCTGAGATCTGGTCATCGGTCAGCTGATCCGCCATTTTCCTTCTTCTAAGCTTTTTTTTTGGAAATC
TGAGAACTTTTTTTTTTTC