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Detailed information on CNT30311950


BLAST search results

BLAST vs Swiss-Prot:
sp|P0DH96|CALM4_ARATH, E-value = 6e-85

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693832Camelina sativaOryza sativa24.698.6683.71178forward
CNT30672655Camelina sativaSetaria viridis42.8658.385.44309forward
CNT30545709Camelina sativaIpomoea triloba43.6933.7384.13315forward
CNT30378266Camelina sativaArabidopsis thaliana21.545.4595.48155forward
CNT30617519Camelina sativaSesamum indicum52.2918.7781.43377forward
CNT30379145Camelina sativaManihot esculenta30.9349.5683.86223forward
CNT30487677Camelina sativaOlea europaea22.6144.983.44163forward
CNT30504265Camelina sativaNicotiana attenuata16.2338.3684.62117forward
CNT30156599Camelina sativaPistacia vera51.7349.4782.84373forward
CNT3097357Camelina sativaSolanum tuberosum45.4916.484.45328forward
CNT30125031Camelina sativaPhyscomitrium patens24.832581.01179forward
CNT30387589Camelina sativaTriticum turgidum30.2410.4883.94218forward
CNT30560106Camelina sativaActinidia chinensis52.1570.6884.31376forward
CNT3085845Camelina sativaVigna radiata31.4817.3382.38227forward
CNT30234205Camelina sativaBrassica oleracea26.3536.6186.84190forward
CNT30553673Camelina sativaOryza glaberrima45.3542.8685.32327forward
CNT30146219Camelina sativaMedicago truncatula22.1964.5283.12160forward
CNT30248464Camelina sativaAvena sativa24.4128.985.8176forward
CNT3073928Camelina sativaBrassica juncea26.3543.3888.95190forward
CNT3011614Camelina sativaZea mays24.1323.1786.21174forward
CNT30607166Camelina sativaGossypium raimondii23.4446.383.43169forward
CNT30231884Camelina sativaAnanas comosus40.527.783.9292forward
CNT30216184Camelina sativaKalanchoe fedtschenkoi26.6339.5186.98192forward
CNT30204543Camelina sativaHelianthus annuus14.8448.8682.24107forward
CNT30346128Camelina sativaEragrostis tef43.8352.7584.18316forward
CNT30479425Camelina sativaArabidopsis halleri52.0163.9988.27375forward
CNT30367748Camelina sativaSorghum bicolor32.8760.9383.12237forward
CNT30621990Camelina sativaCajanus cajan22.4724.4782.1162forward
CNT30596276Camelina sativaOryza meridionalis17.7522.9886.72128forward
CNT30104901Camelina sativaOryza longistaminata24.6910.9983.71178forward
CNT3026117Camelina sativaPopulus trichocarpa18.0330.385.38130forward
CNT30120491Camelina sativaCitrus clementina35.0971.2782.61253forward
CNT3037982Camelina sativaCucumis melo36.3447.4683.97262forward
CNT30332036Camelina sativaDioscorea rotundata23.1653.0283.23167forward
CNT30149356Camelina sativaBrachypodium distachyon32.8710.1585.65237forward
CNT30101815Camelina sativaOryza rufipogon29.439.1185.38212forward
CNT30576402Camelina sativaOryza barthii44.6642.7685.09322forward
CNT30496859Camelina sativaDigitaria exilis24.1328.3887.36174forward
CNT30116198Camelina sativaOryza nivara25.3813.8683.06183forward
CNT30594303Camelina sativaEragrostis curvula45.3551.0188.38327forward
CNT30175579Camelina sativaVigna angularis28.9936.184.21209forward
CNT30335796Camelina sativaCynara cardunculus25.9446.9886.63187forward
CNT3039763Camelina sativaMarchantia polymorpha25.3829.8579.78183forward

Expression of CNT30311950

Peptides detected in this lncRNA

>peptide 1 (66 aa)
MSQIPAYYHQSCKCSRLKLLEAYKRSSSSPFIKSLSHHNLDELLIVNLTISINISLTDHLFNFFIS*

>peptide 2 (77 aa)
MKPFWSLSKTLNASFSSSSESVSFIFLAIRFRNSGKSMVPLPSASTSLIMSWSSASVGFCPSERITVPSSLVVMQPV*

Sequence

>CNT30311950
GCAAAAAGTAAAACCCAAACCCATCGATTTCAATCCAACTTACTTTGATTTTCATTACACACAAAAAATGTCACAAAGCAGAAAATAAAAGAAAACGAAA
AACAAATAATGTCTCAAATTCCAGCATATTATCACCAATCATGCAAATGTTCTCGGTTAAAACTCCTAGAAGCATATAAAAGGTCATCATCATCACCTTT
TATCAAATCACTTAGCCATCATAATCTTGACGAACTCCTCATAGTTAATCTGACCATCTCCATCAACATCAGCCTCACGGATCATCTCTTCAACTTCTTC
ATCAGTTAGCTTCTCCCCAAGATTGGTCATCACATGGCGTAGCTCAGCAGCGGAGATGAAACCGTTCTGGTCCTTGTCGAAAACCCTGAATGCTTCTTTT
AGTTCTTCCTCTGAGTCAGTGTCTTTCATCTTCTTAGCCATCAGGTTCAGAAACTCGGGAAAGTCGATGGTGCCGTTACCATCTGCATCAACCTCGTTGA
TCATGTCTTGGAGCTCAGCCTCTGTTGGGTTCTGTCCTAGTGAACGCATAACTGTACCCAGTTCTTTGGTTGTGATGCAACCTGTGTGATCACAAATGAA
AGAACATTACAATTAATAACCAAGGATGAAGCAATGATAGACACAAAAAGCACATGAATCACTTTTGCCTACCACTTAGAATATATGAGATAACTAATCT
ACACAAAATGGCACTTTAAAC